Click here to switch to the map view.

The map label for this gene is 59711601

Identifier: 59711601

GI number: 59711601

Start: 1096135

End: 1096968

Strand: Reverse

Name: 59711601

Synonym: VF_0994

Alternate gene names: NA

Gene position: 1096968-1096135 (Counterclockwise)

Preceding gene: 59711602

Following gene: 172087682

Centisome position: 37.86

GC content: 39.57

Gene sequence:

>834_bases
ATGAACAGCAGCAGCATGGATGACCGTACTGTACTTATCACACAAGAGCCTAATCAAGTTAACCCAACTTTAACTGAAAG
CCCAAGTGCACCCAAATTCAACCAGCTTCAAGAGCGCATGGTCTACGCCGCGCGTATTAAACCAGAAGAATACAATTTTG
CAGGAAACAACCCACTAATCAGTGCTGCTTCCTCATTACTCTGTATCACGTGTGACTTAAAAAAAGAAAGCTACCAAGAT
ATTGAGTTACTAAAACCTAAATTAGTTGAAGAGTTAAAATCCTTCGAGTTTCAAGCCATTAACTCAGGTGTTGAGAGTAA
TTATGTTGCCTTATCTCGCTACCTGCTTTGCACTTTCGTTGATGAAATCATCGTAACAACGCCATGGGGTTCAGAAAGTC
ACTGGGCCTCAAAAAGCATGTTAAGTAGCTTTCATAACGAAACATATGGTGGTGAGAAATTTTTCTTACTATTAGAAAAA
CTCAGTAGAAACCCTGCTAAGTATTTAGATCTATTAGAGCTAATGTACCTATGTTTGAGCTTAGGTTTTGAAGGTAAATA
TCGAGTGTTATCAAGAGGTCTAGTCGAATTAGACGCCATTCGTGATTCTCTTTATCGCCAAATTCGCTCTTTACGAGGAG
ATGAGCAAGCTAGCCTCTCTCCAAACTGGGAACCGAAACAAGTTCAACGCCATAAACTCACAAGACAAACCTCTTGGGTT
GGCATTGTATGCGTTGTGGTTTTCTCATTGTGTGCTATTTACGGTGGTTTCTATTATGTATTGGACCAACAATCAGAGCA
TGTAATTCAAGCTTTTCAGCAAATTGATTTATAG

Upstream 100 bases:

>100_bases
GATCGCTCTCAACTAACGCAATCTGGAGGATTTGCCTTCCATATTGCAGGTGATTTCCCTGAGCTTTCTCTTTTCTTTTG
GGCAATAAGGAATAGTTAAT

Downstream 100 bases:

>100_bases
GATTTTACGGATGAAATCATTTTTTAATTCATTGCTTAACACATTAAAAAAGACATGGTGTTGGAGCTTATTATTAACAC
TATTTATTGCCTTATTATTG

Product: OmpA family protein

Products: NA

Alternate protein names: OmpA Family Protein; Type VI Secretion System OmpA/MotB Family Protein; Outer Membrane Protein; DotU Family Type IV/VI Secretion System Protein; OmpA/MotB Domain-Containing Protein; OmpA/MotB Domain Protein; Type VI Secretion System Core Protein; OmpA/MotB; SciP Protein; Flagellar Motor Rotation Protein MotB; Replication/Virulence Associated Protein; Ompa/Motb Domain Protein; Type IV/VI Secretion System Protein; DotU Family Type IV / VI Secretion System Protein; Outer Membrane Porin Involved In Nitrogen Fixation; Type VI Secretion System Protein ImpK; OmpA-Family Protein; Type IV / VI Secretion System Protein; Type VI Secretion; Outer Membrane Protein Ompa/Motb Family; OmpA-Type Porin; OmpA-Like Porin; T6ss U; Flagellar Motor Protein; OmpA/MotB-Family Outer Membrane Protein; Type IV / VI Secretion System Family Protein DotU; Type VI Secretion System VasF

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNSSSMDDRTVLITQEPNQVNPTLTESPSAPKFNQLQERMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKESYQD
IELLKPKLVEELKSFEFQAINSGVESNYVALSRYLLCTFVDEIIVTTPWGSESHWASKSMLSSFHNETYGGEKFFLLLEK
LSRNPAKYLDLLELMYLCLSLGFEGKYRVLSRGLVELDAIRDSLYRQIRSLRGDEQASLSPNWEPKQVQRHKLTRQTSWV
GIVCVVVFSLCAIYGGFYYVLDQQSEHVIQAFQQIDL

Sequences:

>Translated_277_residues
MNSSSMDDRTVLITQEPNQVNPTLTESPSAPKFNQLQERMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKESYQD
IELLKPKLVEELKSFEFQAINSGVESNYVALSRYLLCTFVDEIIVTTPWGSESHWASKSMLSSFHNETYGGEKFFLLLEK
LSRNPAKYLDLLELMYLCLSLGFEGKYRVLSRGLVELDAIRDSLYRQIRSLRGDEQASLSPNWEPKQVQRHKLTRQTSWV
GIVCVVVFSLCAIYGGFYYVLDQQSEHVIQAFQQIDL
>Mature_277_residues
MNSSSMDDRTVLITQEPNQVNPTLTESPSAPKFNQLQERMVYAARIKPEEYNFAGNNPLISAASSLLCITCDLKKESYQD
IELLKPKLVEELKSFEFQAINSGVESNYVALSRYLLCTFVDEIIVTTPWGSESHWASKSMLSSFHNETYGGEKFFLLLEK
LSRNPAKYLDLLELMYLCLSLGFEGKYRVLSRGLVELDAIRDSLYRQIRSLRGDEQASLSPNWEPKQVQRHKLTRQTSWV
GIVCVVVFSLCAIYGGFYYVLDQQSEHVIQAFQQIDL

Specific function: Unknown

COG id: COG3455

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31652; Mature: 31652

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSSMDDRTVLITQEPNQVNPTLTESPSAPKFNQLQERMVYAARIKPEEYNFAGNNPLI
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
SAASSLLCITCDLKKESYQDIELLKPKLVEELKSFEFQAINSGVESNYVALSRYLLCTFV
HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DEIIVTTPWGSESHWASKSMLSSFHNETYGGEKFFLLLEKLSRNPAKYLDLLELMYLCLS
HHHHEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LGFEGKYRVLSRGLVELDAIRDSLYRQIRSLRGDEQASLSPNWEPKQVQRHKLTRQTSWV
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GIVCVVVFSLCAIYGGFYYVLDQQSEHVIQAFQQIDL
HHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNSSSMDDRTVLITQEPNQVNPTLTESPSAPKFNQLQERMVYAARIKPEEYNFAGNNPLI
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
SAASSLLCITCDLKKESYQDIELLKPKLVEELKSFEFQAINSGVESNYVALSRYLLCTFV
HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DEIIVTTPWGSESHWASKSMLSSFHNETYGGEKFFLLLEKLSRNPAKYLDLLELMYLCLS
HHHHEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LGFEGKYRVLSRGLVELDAIRDSLYRQIRSLRGDEQASLSPNWEPKQVQRHKLTRQTSWV
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GIVCVVVFSLCAIYGGFYYVLDQQSEHVIQAFQQIDL
HHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA