| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is yfbV [C]
Identifier: 59711445
GI number: 59711445
Start: 925178
End: 925627
Strand: Direct
Name: yfbV [C]
Synonym: VF_0838
Alternate gene names: 59711445
Gene position: 925178-925627 (Clockwise)
Preceding gene: 59711442
Following gene: 59711447
Centisome position: 31.93
GC content: 39.56
Gene sequence:
>450_bases ATGAGTGAAAACGGTTTTTTATTCCGATTTCGAGATGGTCAAACCTATATGGATACTTGGCCTGAGCGAAAAGAGTTAGC TCCGATGTTCCCTGAGCAACGAGTGATTAAAGCAACTAAGTTCGCTGTTAAAGTCATGCCAGCGGTTGCGGTTATCAGCG TATTAACGCAAATGGTTTTTAATAATACTGCTGGGTTGCCACAAGCGATCATCATTGCATTGTTTGCCATTAGTATGCCA TTACAAGGTTTTTGGTGGTTAGGTAATAGAGCGAATACAAAATTACCGCCAGCATTAGCGAGTTGGTATCGTGAGTTATA CCAAAAAATTATTGAATCAGGGGCGGCATTAGAGCCAATGAAGAGTCAGCCACGTTATAAAGAACTGGCGAATATTTTGA ATAAAGCGTTTAAACAGTTAGATAAAACAGCTTTAGAACGTTGGTTTTAA
Upstream 100 bases:
>100_bases AAGATAACAAAAATATTTTAAGATAATATTAATTCTAATCAAGTTTATTCTGTATTTTTTTGAATGATTCAACTTTTGTT TAGAAGTCCAAGGGGGCAAT
Downstream 100 bases:
>100_bases TATTTTCTTACATAAAGTATAGATAATAAAAAAGGAGCTAATTTTAGCTCCTTTTTTGATCTTTAGTTATCAACAATCTG AATGAGTATTCAGATTGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSENGFLFRFRDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNTAGLPQAIIIALFAISMP LQGFWWLGNRANTKLPPALASWYRELYQKIIESGAALEPMKSQPRYKELANILNKAFKQLDKTALERWF
Sequences:
>Translated_149_residues MSENGFLFRFRDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNTAGLPQAIIIALFAISMP LQGFWWLGNRANTKLPPALASWYRELYQKIIESGAALEPMKSQPRYKELANILNKAFKQLDKTALERWF >Mature_148_residues SENGFLFRFRDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVFNNTAGLPQAIIIALFAISMPL QGFWWLGNRANTKLPPALASWYRELYQKIIESGAALEPMKSQPRYKELANILNKAFKQLDKTALERWF
Specific function: Unknown
COG id: COG3092
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0208 family [H]
Homologues:
Organism=Escherichia coli, GI1788632, Length=141, Percent_Identity=48.2269503546099, Blast_Score=140, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007334 [H]
Pfam domain/function: PF04217 DUF412 [H]
EC number: NA
Molecular weight: Translated: 17144; Mature: 17013
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSENGFLFRFRDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVF CCCCCCEEEEECCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNTAGLPQAIIIALFAISMPLQGFWWLGNRANTKLPPALASWYRELYQKIIESGAALEPM HCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC KSQPRYKELANILNKAFKQLDKTALERWF CCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SENGFLFRFRDGQTYMDTWPERKELAPMFPEQRVIKATKFAVKVMPAVAVISVLTQMVF CCCCCEEEEECCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NNTAGLPQAIIIALFAISMPLQGFWWLGNRANTKLPPALASWYRELYQKIIESGAALEPM HCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC KSQPRYKELANILNKAFKQLDKTALERWF CCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA