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The map label for this gene is 59711260

Identifier: 59711260

GI number: 59711260

Start: 717321

End: 717830

Strand: Direct

Name: 59711260

Synonym: VF_0653

Alternate gene names: NA

Gene position: 717321-717830 (Clockwise)

Preceding gene: 59711259

Following gene: 59711261

Centisome position: 24.76

GC content: 40.2

Gene sequence:

>510_bases
ATGAAAAAAACGCATGTGACTATCGGGTTAAGTAACCCCAAAAGTCCGACAAATGTTGGTGCAGTAATGCGTGCTGCTGG
TTGTTATCAAGTTGATGATGTTCGCTATACTGGTGAGCGATATGATCGTGCTGCTAAATTTCAAACGGATACGAAAAAAG
TTGCCAGCAAAATCCCATTAACAAGCGTAAATTGCTTATTAGACGATCTACCAGAAGACATGAAAGTCGTTTGTGTTGAA
TTAGCTGAAGGAGCAGTATCTCTTCCTCAATTTCAACATCCAGATAAAGCAATTTATGTCTTTGGTCCTGAAGATGGTTC
GATAACTCAACAGGTAGCTGATCGTGCTGATCATGTTGTTTATGTTCCTACAGTAGGGTGCATGAACCTAGCTGCGACAG
TGAATGTTCTTTTATATGATCGCTTGGCAAAATCGGAAGATATTGTACAAGGTGATGAGCTAATTCGAAGCAGTCGTGAT
AACCGCAACCATCTCGTTGTAAAAAAGTAA

Upstream 100 bases:

>100_bases
TTGGGTAAAGACGGCTCTTTTCAAATAAAACCGTTGAAGTTTAGGCTTCAGCGGTTTTTTTGTTAGAATGCTTTTTTAAT
TTTATCTGTTGGAATAAGCA

Downstream 100 bases:

>100_bases
TGATGGAAACAGAATGAAAGCTTGCTTGAGTTCACATCTTTTTGGTGCATTTTTGGCTAGATGTGTTCTAATAGCGGGCA
TTAAAGGGAATGCTGTGATT

Product: 23S rRNA methyltransferase

Products: NA

Alternate protein names: RNA Methyltransferase; 23S RRNA Methyltransferase; RNA Methyltransferase TrmH Family; Cold-Shock RNA Methyltransferase; rRNA Methylase; TrmH Family RNA Methyltransferase; TRNA/RRNA MethyltransferaU; rRNA Methyltransferase; SpoU RRNA Methylase Family Protein; rRNA Methylase-Family Protein; SpoU Class RRNA Methylase

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVASKIPLTSVNCLLDDLPEDMKVVCVE
LAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVADRADHVVYVPTVGCMNLAATVNVLLYDRLAKSEDIVQGDELIRSSRD
NRNHLVVKK

Sequences:

>Translated_169_residues
MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVASKIPLTSVNCLLDDLPEDMKVVCVE
LAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVADRADHVVYVPTVGCMNLAATVNVLLYDRLAKSEDIVQGDELIRSSRD
NRNHLVVKK
>Mature_169_residues
MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVASKIPLTSVNCLLDDLPEDMKVVCVE
LAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVADRADHVVYVPTVGCMNLAATVNVLLYDRLAKSEDIVQGDELIRSSRD
NRNHLVVKK

Specific function: Unknown

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18605; Mature: 18605

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVASKIPL
CCCEEEEEEECCCCCCCHHHHHHHHCCCEEECCEEECCHHHHHHHHCCHHHHHHHHHCCC
TSVNCLLDDLPEDMKVVCVELAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVADRADHVV
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEE
YVPTVGCMNLAATVNVLLYDRLAKSEDIVQGDELIRSSRDNRNHLVVKK
EECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEC
>Mature Secondary Structure
MKKTHVTIGLSNPKSPTNVGAVMRAAGCYQVDDVRYTGERYDRAAKFQTDTKKVASKIPL
CCCEEEEEEECCCCCCCHHHHHHHHCCCEEECCEEECCHHHHHHHHCCHHHHHHHHHCCC
TSVNCLLDDLPEDMKVVCVELAEGAVSLPQFQHPDKAIYVFGPEDGSITQQVADRADHVV
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEE
YVPTVGCMNLAATVNVLLYDRLAKSEDIVQGDELIRSSRDNRNHLVVKK
EECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA