| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is slt [H]
Identifier: 59711165
GI number: 59711165
Start: 606364
End: 608298
Strand: Direct
Name: slt [H]
Synonym: VF_0558
Alternate gene names: 59711165
Gene position: 606364-608298 (Clockwise)
Preceding gene: 59711161
Following gene: 59711166
Centisome position: 20.93
GC content: 36.38
Gene sequence:
>1935_bases ATGAAATATACACAATATAAGTTAGGGATGATGACGGCATTGTGCATAGGTATGAATGTACAAGTTGTTGATGCGTCACC TGTTGATACATGGCGAGCACAATACCAAGAAGCAAAAACGCTACTTAATGAAAAAAAATACGATGAATATAAAAAAGTAA GGGCTGAACTTGATGGTTATTCATTAGCACCTTATTTGGATTACCGTGAATTAAGAATGGATTTAAGCTCTAAAACGCCT GATGATATTCGTTTGTTCAAACATAATCATCAGTCATTACCTATTGGTAATTCTCTTTCATACCAATACTTAGTCATTCT TGGTTTAAACGAGCGTTGGGCTGAATTTATTGATTATTTCCCCAACGAACCAAGCAGCAAAAACCTACAGTGTTATTACT ATCAAGCAAAAAATAAACTGGGTGATAAAGCCACAGCTTGGAAAGGTGCGGAGCAATTATGGTTAACAGGTAGCTCTGTT ACTTATGAATGTGATGATTTATTTCAAGATTGGGCTGAAGCTGGGAAACTCAGTGATGATTTAATTATTGAACGTATGCT TTTAGTTTATAAAGCTCGTAATAATAATTTGTTTTCTTATTTAGAAAAAATGTTGAAAGCAGATGCCGCAAAAGAAAAAG CACAGCATATTGTCACTTTGTTTAATGATCCTGATTTGTTAGAAAGTTTTTCAAAGAGTAATAAAAAAACAGAGTTTTCT AAGCAATTAACGCTTATTTCTATGGAAAGAGAAGCTCGTAAAAACCCTAAAAAAGCGATAGAAATATTGCCTGACATTGC TAAAAAGCAGCTGTTTACTCAAGAAGAGTTGGTTCAGGTTAAACGACGCATTGTTAGTAGCATTATGTCAACTGAGTCAG CAGAACTTGCACAATGGAGAGATAAAGAGCTAGCTGCTAACCCTGAAGATTCATTTATTGAGCGCCGAATTCGTGTTGCT ATTCGTGCAGCTGATTGGGATGACGTAAGCAACTGGATTGAGTATTTAACACCAACAGCTAAAAACTCATTACGTTGGCA GTTCTGGACGGCACAGATTGAAAGTAAAGAAGGTGAGCAAGATAAAGCTGATGCTCGTTTAAAAAAATTACTTGGTCAGC GTAATTTTTATAGTGTTGCTGCGGCAAATATTTTAGGTGAACCTATTCAATATCCAATGAATACCGCCCCTAGAAATATT AAGCCGATTAAAGATAAATACAGTGTAGAGCTTGCACGTATTAAAGAATTAATTGCGATTGATGAGATCCCTACAGCCAA AAGTGAGTGGGAATATTTGCTAAATCGAGCATCGAAAACTGAAGTGAAAGAATTAGCAAGTTATGCTGCTCAGCATCGTT GGCATCACTTTACTGTTCTGGCGACCATCAAAGGAAGAATGTGGGGATATTTGAGCTTACGTTTCCCTATAGCACATCAG TGGTGGTTTAATCATTACAGTAAGGAACTTGGTTTAGATAAAGTGACGTTAATGTCGTTATCTCGACAAGAAAGTGCATT GTATGCAGAAGCTCAATCACCGGTAGGTGCTCGTGGTTTGATGCAAATTATGCCAGCAACAGCGAAATATACCGCGAAGA AGATTGATTACGATAAATACGAAGGTGTTGATAGTTTGAATGATGTTGATGTGAATATTCACATTGGTTCAAATTACCTT AAGGGTTTATTAGATGATTATGATGGAAACCGTATTTTTGCTCTTGCAGGTTATAATGCCGGCCCTCATCGTGTTAAGCG TTGGAGAGCGGTTTCTGATGAAAAGCTAGATGCTTATGCTTTTATTGAAGCTATTCCATTCAAGGAAACTAGAGGGTATG TACAAAACATTTTAATGTTTGAAACTTACTATCGTAGTTTATTGGGTGAAAAAGGTGCTTTTTTATCCGAGAAAGAGCTG AATTTAAAGTATTGA
Upstream 100 bases:
>100_bases ATATAAGTAAACTAAGGTAAGAATTCGGTAGATGTATAAGTGAGTCTCAGATCACTACGCCGCAGTCAAAGGTTGGAAAG TTTAGGTGTTAAAGAAATCA
Downstream 100 bases:
>100_bases TAAGTTTAAATTCTAATAGCAATTGGTATTAAGCTTAAATAAATATAAAGTAGGGGACTTAATTGTCCCCTTTTTTACAA TTGTATGAGGATACTATGTC
Product: lytic murein transglycosylase, soluble
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MKYTQYKLGMMTALCIGMNVQVVDASPVDTWRAQYQEAKTLLNEKKYDEYKKVRAELDGYSLAPYLDYRELRMDLSSKTP DDIRLFKHNHQSLPIGNSLSYQYLVILGLNERWAEFIDYFPNEPSSKNLQCYYYQAKNKLGDKATAWKGAEQLWLTGSSV TYECDDLFQDWAEAGKLSDDLIIERMLLVYKARNNNLFSYLEKMLKADAAKEKAQHIVTLFNDPDLLESFSKSNKKTEFS KQLTLISMEREARKNPKKAIEILPDIAKKQLFTQEELVQVKRRIVSSIMSTESAELAQWRDKELAANPEDSFIERRIRVA IRAADWDDVSNWIEYLTPTAKNSLRWQFWTAQIESKEGEQDKADARLKKLLGQRNFYSVAAANILGEPIQYPMNTAPRNI KPIKDKYSVELARIKELIAIDEIPTAKSEWEYLLNRASKTEVKELASYAAQHRWHHFTVLATIKGRMWGYLSLRFPIAHQ WWFNHYSKELGLDKVTLMSLSRQESALYAEAQSPVGARGLMQIMPATAKYTAKKIDYDKYEGVDSLNDVDVNIHIGSNYL KGLLDDYDGNRIFALAGYNAGPHRVKRWRAVSDEKLDAYAFIEAIPFKETRGYVQNILMFETYYRSLLGEKGAFLSEKEL NLKY
Sequences:
>Translated_644_residues MKYTQYKLGMMTALCIGMNVQVVDASPVDTWRAQYQEAKTLLNEKKYDEYKKVRAELDGYSLAPYLDYRELRMDLSSKTP DDIRLFKHNHQSLPIGNSLSYQYLVILGLNERWAEFIDYFPNEPSSKNLQCYYYQAKNKLGDKATAWKGAEQLWLTGSSV TYECDDLFQDWAEAGKLSDDLIIERMLLVYKARNNNLFSYLEKMLKADAAKEKAQHIVTLFNDPDLLESFSKSNKKTEFS KQLTLISMEREARKNPKKAIEILPDIAKKQLFTQEELVQVKRRIVSSIMSTESAELAQWRDKELAANPEDSFIERRIRVA IRAADWDDVSNWIEYLTPTAKNSLRWQFWTAQIESKEGEQDKADARLKKLLGQRNFYSVAAANILGEPIQYPMNTAPRNI KPIKDKYSVELARIKELIAIDEIPTAKSEWEYLLNRASKTEVKELASYAAQHRWHHFTVLATIKGRMWGYLSLRFPIAHQ WWFNHYSKELGLDKVTLMSLSRQESALYAEAQSPVGARGLMQIMPATAKYTAKKIDYDKYEGVDSLNDVDVNIHIGSNYL KGLLDDYDGNRIFALAGYNAGPHRVKRWRAVSDEKLDAYAFIEAIPFKETRGYVQNILMFETYYRSLLGEKGAFLSEKEL NLKY >Mature_644_residues MKYTQYKLGMMTALCIGMNVQVVDASPVDTWRAQYQEAKTLLNEKKYDEYKKVRAELDGYSLAPYLDYRELRMDLSSKTP DDIRLFKHNHQSLPIGNSLSYQYLVILGLNERWAEFIDYFPNEPSSKNLQCYYYQAKNKLGDKATAWKGAEQLWLTGSSV TYECDDLFQDWAEAGKLSDDLIIERMLLVYKARNNNLFSYLEKMLKADAAKEKAQHIVTLFNDPDLLESFSKSNKKTEFS KQLTLISMEREARKNPKKAIEILPDIAKKQLFTQEELVQVKRRIVSSIMSTESAELAQWRDKELAANPEDSFIERRIRVA IRAADWDDVSNWIEYLTPTAKNSLRWQFWTAQIESKEGEQDKADARLKKLLGQRNFYSVAAANILGEPIQYPMNTAPRNI KPIKDKYSVELARIKELIAIDEIPTAKSEWEYLLNRASKTEVKELASYAAQHRWHHFTVLATIKGRMWGYLSLRFPIAHQ WWFNHYSKELGLDKVTLMSLSRQESALYAEAQSPVGARGLMQIMPATAKYTAKKIDYDKYEGVDSLNDVDVNIHIGSNYL KGLLDDYDGNRIFALAGYNAGPHRVKRWRAVSDEKLDAYAFIEAIPFKETRGYVQNILMFETYYRSLLGEKGAFLSEKEL NLKY
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=636, Percent_Identity=33.6477987421384, Blast_Score=401, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 74588; Mature: 74588
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYTQYKLGMMTALCIGMNVQVVDASPVDTWRAQYQEAKTLLNEKKYDEYKKVRAELDGY CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SLAPYLDYRELRMDLSSKTPDDIRLFKHNHQSLPIGNSLSYQYLVILGLNERWAEFIDYF CCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHC PNEPSSKNLQCYYYQAKNKLGDKATAWKGAEQLWLTGSSVTYECDDLFQDWAEAGKLSDD CCCCCCCCEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCHH LIIERMLLVYKARNNNLFSYLEKMLKADAAKEKAQHIVTLFNDPDLLESFSKSNKKTEFS HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHCCCCHHHH KQLTLISMEREARKNPKKAIEILPDIAKKQLFTQEELVQVKRRIVSSIMSTESAELAQWR HHHHHEEEHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHC DKELAANPEDSFIERRIRVAIRAADWDDVSNWIEYLTPTAKNSLRWQFWTAQIESKEGEQ CCCCCCCCCHHHHHHHHHHEEEECCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC DKADARLKKLLGQRNFYSVAAANILGEPIQYPMNTAPRNIKPIKDKYSVELARIKELIAI HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DEIPTAKSEWEYLLNRASKTEVKELASYAAQHRWHHFTVLATIKGRMWGYLSLRFPIAHQ CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCHHHH WWFNHYSKELGLDKVTLMSLSRQESALYAEAQSPVGARGLMQIMPATAKYTAKKIDYDKY HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCHHH EGVDSLNDVDVNIHIGSNYLKGLLDDYDGNRIFALAGYNAGPHRVKRWRAVSDEKLDAYA CCCCCCCCEEEEEEECCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHH FIEAIPFKETRGYVQNILMFETYYRSLLGEKGAFLSEKELNLKY HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MKYTQYKLGMMTALCIGMNVQVVDASPVDTWRAQYQEAKTLLNEKKYDEYKKVRAELDGY CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SLAPYLDYRELRMDLSSKTPDDIRLFKHNHQSLPIGNSLSYQYLVILGLNERWAEFIDYF CCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHC PNEPSSKNLQCYYYQAKNKLGDKATAWKGAEQLWLTGSSVTYECDDLFQDWAEAGKLSDD CCCCCCCCEEEEEEECCCCCCCCHHHCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCCHH LIIERMLLVYKARNNNLFSYLEKMLKADAAKEKAQHIVTLFNDPDLLESFSKSNKKTEFS HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHCCCCHHHH KQLTLISMEREARKNPKKAIEILPDIAKKQLFTQEELVQVKRRIVSSIMSTESAELAQWR HHHHHEEEHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHC DKELAANPEDSFIERRIRVAIRAADWDDVSNWIEYLTPTAKNSLRWQFWTAQIESKEGEQ CCCCCCCCCHHHHHHHHHHEEEECCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCC DKADARLKKLLGQRNFYSVAAANILGEPIQYPMNTAPRNIKPIKDKYSVELARIKELIAI HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH DEIPTAKSEWEYLLNRASKTEVKELASYAAQHRWHHFTVLATIKGRMWGYLSLRFPIAHQ CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEEEEECCHHHH WWFNHYSKELGLDKVTLMSLSRQESALYAEAQSPVGARGLMQIMPATAKYTAKKIDYDKY HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCHHH EGVDSLNDVDVNIHIGSNYLKGLLDDYDGNRIFALAGYNAGPHRVKRWRAVSDEKLDAYA CCCCCCCCEEEEEEECCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHH FIEAIPFKETRGYVQNILMFETYYRSLLGEKGAFLSEKELNLKY HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]