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The map label for this gene is deoB

Identifier: 59711113

GI number: 59711113

Start: 543513

End: 544745

Strand: Direct

Name: deoB

Synonym: VF_0506

Alternate gene names: 59711113

Gene position: 543513-544745 (Clockwise)

Preceding gene: 59711112

Following gene: 59711114

Centisome position: 18.76

GC content: 42.01

Gene sequence:

>1233_bases
ATGAAACGTGCAATAATTTTAGTTCTCGATTCATTTGGAATTGGTGCAGCAGGCGATGCTGATAAATTTGGTGATGTAGG
TTCAGATACGATGGGCCACATTGCAGAGCAGTGTGATAAAGGATTAGCTGATAATGGAAACCGTAAAGGGCCACTAACGC
TGCCTAATTTATCTAAACTTGGCTTAGCAATGGCGGGTAAAGAATCTACTGGCAAATTCTCTGCTGGTTTAGATGCTAAC
GCTGAAATTATCGGTGCTTATGGTCATGCTGCTGAGTTATCTTCAGGTAAAGATACACCATCTGGCCACTGGGAAATTGC
AGGTGTACCTGTTTTATTTGACTGGGGTTATTTCACTGATAAAGAAAACAGCTTTCCTAAAGAGCTAACAGATCGCATTT
TAGAGCGTGCTAACCTTCCGGGTTATTTAGGAAATTGCCATGCATCGGGCACACAAGTGTTAGATGATTTAGGTGAAGAG
CACATGAAAACGGGCATGCCTATTTTCTATACTTCTGCTGACTCTGTATTCCAAATTGCATGTCACGAAGAAACGTTTGG
TTTAGATAACCTATTAACGCTTTGCCAAATCGCACGTGAAGAGCTTGAAGATTACAATATTGGTCGAGTGATCGCTCGTC
CGTTTATTGGTCCGGGTAAAGGTCAATTTGAACGTACAGGTAACCGTCGCGATCTTTCTGTTGAGCCGCCAGCGGCAACG
ATTTTACAAAAATTAGTGGATGAAAAGGGTGGTCAAGTTCATTCGATTGGTAAAATCTCTGATATCTATGCGGGTTGCGG
TATTACGAAGAAAACCAAAGCAACGGGTATCCCTGCATTATTTGATGCAACTAAAGAAGCGATTGAACAAGCGATTGAAC
AAGCGGGTGACAACACTATCGTATTCACTAACTTCGTAGATTTTGATTCAGCATACGGTCACCGTCGTGATGTAGCAGGT
TATGCTGCAGCATTAGAATACTTTGATGGGCGTCTTCCTGAAATTATGGATATGCTACAAGAAGATGATATTTTGATCCT
GACTGCCGATCACGGTTGTGATCCTACATGGCCAGGTACAGATCATACACGTGAGCACATTCCTGTTCTTGTTTACGGTC
ATAAGGTACCAGCAGGCTCATTAGGTCGTCGTGATACATTTGCCGATATAGGTCAAACCTTAGCAGAGTATTTTGAAACC
TCTGATATGGAATATGGAAAATCTTTCCTATAA

Upstream 100 bases:

>100_bases
AATGCAGTAAAAGCAGCGATTGTGATTAGTGAGAAACAACCAGAAGCGACTCCTGAAGTTTACCGTAAAATTCGCCCTGA
AGATGTGTAAGGAATAAAAC

Downstream 100 bases:

>100_bases
AAATAAATAAGCAGTAGGGCCCTTCTCTACTGCTTTTTTTCTATTTTAAGTAAACACAAAGGATATAAATTATGGCAACT
CCACATATTAATGCTGAAAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MKRAIILVLDSFGIGAAGDADKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKLGLAMAGKESTGKFSAGLDAN
AEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTDKENSFPKELTDRILERANLPGYLGNCHASGTQVLDDLGEE
HMKTGMPIFYTSADSVFQIACHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGPGKGQFERTGNRRDLSVEPPAAT
ILQKLVDEKGGQVHSIGKISDIYAGCGITKKTKATGIPALFDATKEAIEQAIEQAGDNTIVFTNFVDFDSAYGHRRDVAG
YAAALEYFDGRLPEIMDMLQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGHKVPAGSLGRRDTFADIGQTLAEYFET
SDMEYGKSFL

Sequences:

>Translated_410_residues
MKRAIILVLDSFGIGAAGDADKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKLGLAMAGKESTGKFSAGLDAN
AEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTDKENSFPKELTDRILERANLPGYLGNCHASGTQVLDDLGEE
HMKTGMPIFYTSADSVFQIACHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGPGKGQFERTGNRRDLSVEPPAAT
ILQKLVDEKGGQVHSIGKISDIYAGCGITKKTKATGIPALFDATKEAIEQAIEQAGDNTIVFTNFVDFDSAYGHRRDVAG
YAAALEYFDGRLPEIMDMLQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGHKVPAGSLGRRDTFADIGQTLAEYFET
SDMEYGKSFL
>Mature_410_residues
MKRAIILVLDSFGIGAAGDADKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKLGLAMAGKESTGKFSAGLDAN
AEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTDKENSFPKELTDRILERANLPGYLGNCHASGTQVLDDLGEE
HMKTGMPIFYTSADSVFQIACHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGPGKGQFERTGNRRDLSVEPPAAT
ILQKLVDEKGGQVHSIGKISDIYAGCGITKKTKATGIPALFDATKEAIEQAIEQAGDNTIVFTNFVDFDSAYGHRRDVAG
YAAALEYFDGRLPEIMDMLQEDDILILTADHGCDPTWPGTDHTREHIPVLVYGHKVPAGSLGRRDTFADIGQTLAEYFET
SDMEYGKSFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=412, Percent_Identity=76.2135922330097, Blast_Score=642, Evalue=0.0,
Organism=Escherichia coli, GI1789781, Length=446, Percent_Identity=28.2511210762332, Blast_Score=118, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_VIBF1 (Q5E7J5)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_203889.1
- ProteinModelPortal:   Q5E7J5
- SMR:   Q5E7J5
- STRING:   Q5E7J5
- GeneID:   3278101
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_0506
- NMPDR:   fig|312309.3.peg.506
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- PhylomeDB:   Q5E7J5
- ProtClustDB:   PRK05362
- BioCyc:   VFIS312309:VF0506-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44361; Mature: 44361

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIILVLDSFGIGAAGDADKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKL
CCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
GLAMAGKESTGKFSAGLDANAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTD
HHEECCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCC
KENSFPKELTDRILERANLPGYLGNCHASGTQVLDDLGEEHMKTGMPIFYTSADSVFQIA
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE
CHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGPGKGQFERTGNRRDLSVEPPAAT
ECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCCCCHHH
ILQKLVDEKGGQVHSIGKISDIYAGCGITKKTKATGIPALFDATKEAIEQAIEQAGDNTI
HHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
VFTNFVDFDSAYGHRRDVAGYAAALEYFDGRLPEIMDMLQEDDILILTADHGCDPTWPGT
EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCC
DHTREHIPVLVYGHKVPAGSLGRRDTFADIGQTLAEYFETSDMEYGKSFL
CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MKRAIILVLDSFGIGAAGDADKFGDVGSDTMGHIAEQCDKGLADNGNRKGPLTLPNLSKL
CCCEEEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
GLAMAGKESTGKFSAGLDANAEIIGAYGHAAELSSGKDTPSGHWEIAGVPVLFDWGYFTD
HHEECCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCC
KENSFPKELTDRILERANLPGYLGNCHASGTQVLDDLGEEHMKTGMPIFYTSADSVFQIA
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEE
CHEETFGLDNLLTLCQIAREELEDYNIGRVIARPFIGPGKGQFERTGNRRDLSVEPPAAT
ECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCHHCCCCCCCCCCCCCHHH
ILQKLVDEKGGQVHSIGKISDIYAGCGITKKTKATGIPALFDATKEAIEQAIEQAGDNTI
HHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
VFTNFVDFDSAYGHRRDVAGYAAALEYFDGRLPEIMDMLQEDDILILTADHGCDPTWPGT
EEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCC
DHTREHIPVLVYGHKVPAGSLGRRDTFADIGQTLAEYFETSDMEYGKSFL
CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA