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The map label for this gene is rbfA [H]

Identifier: 59711094

GI number: 59711094

Start: 524018

End: 524425

Strand: Direct

Name: rbfA [H]

Synonym: VF_0487

Alternate gene names: 59711094

Gene position: 524018-524425 (Clockwise)

Preceding gene: 59711093

Following gene: 59711095

Centisome position: 18.08

GC content: 41.18

Gene sequence:

>408_bases
ATGTCAAAAGAATTTAGCCGCACACAGCGTGTGTCGCAACAATTACAAAAAGAACTAGCAGTTATGCTACAACGTGAAGT
TCGTGATTCACGTATCGGTATGGTGACGATTTCTGATGTAGAAGTATCACGTGACTTAGCTTATGCAAAAGTATTCGTGA
CTTTCTTCTGTGTTGGTGAGCAAACTCCAGAATCAAGCTTAGCCGCTCTAAAAGAGCACGAGCCATCATTACGTATGATG
CTTGGCAAGCGCATTCGTTTACGTCTAACTCCTGAAATTCGTTTTACTTACGACAACACGCTTGTTGAAGGTATGCGTAT
GTCTAACTTAGTAACTGATGTTGTTAATACAGATAAGCGTAAAATGGCAGAATCAGGCCGTACCGAATCAGATGAAGGTG
AAGAGTAA

Upstream 100 bases:

>100_bases
TACTAACGTTATCTTTAAAGGTAAGTAGTAATCGGTTGTTGAATACACCATGGGGGGCTGGTAATTACCAAGCCCCCCAT
CTTTCTAAGAGAGAAAAGAT

Downstream 100 bases:

>100_bases
TGGCTCGCCGTCGTAAGGGTCGTCCGGTTAATGGTGTTATCTTAATTGATAAACCAACAGGTATTACTTCAAACGATACT
CTGCAAAAAGTTAAACGCAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSKEFSRTQRVSQQLQKELAVMLQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGEQTPESSLAALKEHEPSLRMM
LGKRIRLRLTPEIRFTYDNTLVEGMRMSNLVTDVVNTDKRKMAESGRTESDEGEE

Sequences:

>Translated_135_residues
MSKEFSRTQRVSQQLQKELAVMLQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGEQTPESSLAALKEHEPSLRMM
LGKRIRLRLTPEIRFTYDNTLVEGMRMSNLVTDVVNTDKRKMAESGRTESDEGEE
>Mature_134_residues
SKEFSRTQRVSQQLQKELAVMLQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGEQTPESSLAALKEHEPSLRMML
GKRIRLRLTPEIRFTYDNTLVEGMRMSNLVTDVVNTDKRKMAESGRTESDEGEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=137, Percent_Identity=53.2846715328467, Blast_Score=138, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15523; Mature: 15392

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEFSRTQRVSQQLQKELAVMLQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
QTPESSLAALKEHEPSLRMMLGKRIRLRLTPEIRFTYDNTLVEGMRMSNLVTDVVNTDKR
CCCHHHHHHHHHCCCHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHCCHHH
KMAESGRTESDEGEE
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
SKEFSRTQRVSQQLQKELAVMLQREVRDSRIGMVTISDVEVSRDLAYAKVFVTFFCVGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCC
QTPESSLAALKEHEPSLRMMLGKRIRLRLTPEIRFTYDNTLVEGMRMSNLVTDVVNTDKR
CCCHHHHHHHHHCCCHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHCCHHH
KMAESGRTESDEGEE
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA