| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is yceN [H]
Identifier: 59711072
GI number: 59711072
Start: 495788
End: 497347
Strand: Direct
Name: yceN [H]
Synonym: VF_0465
Alternate gene names: 59711072
Gene position: 495788-497347 (Clockwise)
Preceding gene: 59711070
Following gene: 59711073
Centisome position: 17.11
GC content: 40.0
Gene sequence:
>1560_bases GTGAGTAAACGACTTTTACGTTCTGGCTTAATAGTCAGCATCATGACTTTAGTGTCTCGAGTTCTCGGTTTAGTCCGTGA TGTCGTGGTTGCAAATCTTATGGGCGCAGGAGCATCGGCTGATGTTTTCTTCTTTGCAAATAAGATCCCCAACTTTTTAC GTCGTCTATTTGCAGAGGGCGCTTTTTCTCAAGCATTTGTCCCTGTTTTAACTGAATACCATGCCAGTGGGGATGACAAC AAAACGCGTGAATTAATTGCAAAAGCCTCGGGAACGCTTGGGGTTCTTGTTACCATCGTCACCTTCTTTGGTATTATTGG CTCAGGTGTCGTCACTGCATTGTTTGGTGCAGGTTGGTTTATGGATTGGCTTAATGATGGTCCAGCAGCACCTAAATTTG AGTTGGCCAGCTTTCTTTTAAAAATTACCTTTCCTTATTTATGGTTTATCACATTTGTAGCCTTGTCGGGCGCCATTTTA AATACCCTTGGTAAGTTTGCTGTTTCTTCTTTTACACCTGTTTTCCTTAATATAGCTATTATTGCGTGTGCATATTTTGT CTCTCCTAATTTGGAGCAGCCAGAAATCGGTTTAGCAATAGGTGTCTTTTTAGGCGGTTTAATCCAATTCTTATTCCAAC TTCCATTTCTTTATAAAGCAAAGATGTTAGTTCGCCCACAATGGGGGTGGAATGATCCTGGTGTGGTAAAAATCAGAACC TTAATGATCCCAGCATTATTTGGTGTGTCTGTTAGTCAAATCAACTTATTATTTGATACCTTTATTGCCAGCTTTTTAGC GACGGGCTCGATCAGTTGGCTATATTATTCAGATCGTCTGTTAGAGTTTCCTTTAGGGCTATTTGGTATTGCTATTGCAA CCGTGATATTACCAGCATTATCACGTAAACATGTCGATGCCGAAGGCGATGGATTCTCACAAACTATGGATTGGGGGGTG AGAATGGTGATTTTACTTGGTATTCCAGCCATGCTGGGCTTAATGGTATTGGCCAAACCAATGCTCATGGTTTTGTTTAT GCGTGGTGAGTTTTCTCCAAATGATGTACACCAAGCTTCTCTGTCCTTATTGGCTTACGCATCTGGTTTGCTGAACTTTA TGTTAATTAAGGTATTAGCGCCTGGTTATTATGCTCGTCAAGATACTAAAACACCAGTTCGTTACGGTATCATTGCCATG GTAACTAACATGTTCTTTAATGCTATTTTTGCTTATTTTTATGGCTATGTTGGTCTTGCTATGGCGACAGCATTATCTGC ATTAGTTAATATGGTTCTCTTATATAGAGGACTGCATTTAGCAAACGTATATAAATTATCAAAAGAGACGGTATTTTTTG TATTGAAGCTAATTGTGTCAGGCGGTGTTATGGTATCTATTTTACTGTGGCTGATGCCGAGCATGAGCATCTGGTTAGAG TGGGATTTGGCTAAGCGAGTTATGATGCTATTTGCCTTTATTGGTTTAGGTGCCATTTCTTACTTAATCACAGCTATTGT ATTTGGATTACGCCTGCGTCATTTAAGAGCATCAGTCTAA
Upstream 100 bases:
>100_bases ACTGGCAAAACACGGTTAAGATGACGTGCATTCTAACAGCATTTTTTCCAGTTAGTAAGCTCTTTATGGTCATCATTACC ATCTTTATGAGGTTTTTTTT
Downstream 100 bases:
>100_bases ATTAAGAATTGCTTTTGTTCAGTGGTCTGAATGAGTACATTAGTATATAATTCGTCAGTTTTTTTAAGCGAATAAATTGA TATTGAGATAATGGAATTAA
Product: inner membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MSKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEGAFSQAFVPVLTEYHASGDDN KTRELIAKASGTLGVLVTIVTFFGIIGSGVVTALFGAGWFMDWLNDGPAAPKFELASFLLKITFPYLWFITFVALSGAIL NTLGKFAVSSFTPVFLNIAIIACAYFVSPNLEQPEIGLAIGVFLGGLIQFLFQLPFLYKAKMLVRPQWGWNDPGVVKIRT LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRKHVDAEGDGFSQTMDWGV RMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHQASLSLLAYASGLLNFMLIKVLAPGYYARQDTKTPVRYGIIAM VTNMFFNAIFAYFYGYVGLAMATALSALVNMVLLYRGLHLANVYKLSKETVFFVLKLIVSGGVMVSILLWLMPSMSIWLE WDLAKRVMMLFAFIGLGAISYLITAIVFGLRLRHLRASV
Sequences:
>Translated_519_residues MSKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEGAFSQAFVPVLTEYHASGDDN KTRELIAKASGTLGVLVTIVTFFGIIGSGVVTALFGAGWFMDWLNDGPAAPKFELASFLLKITFPYLWFITFVALSGAIL NTLGKFAVSSFTPVFLNIAIIACAYFVSPNLEQPEIGLAIGVFLGGLIQFLFQLPFLYKAKMLVRPQWGWNDPGVVKIRT LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRKHVDAEGDGFSQTMDWGV RMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHQASLSLLAYASGLLNFMLIKVLAPGYYARQDTKTPVRYGIIAM VTNMFFNAIFAYFYGYVGLAMATALSALVNMVLLYRGLHLANVYKLSKETVFFVLKLIVSGGVMVSILLWLMPSMSIWLE WDLAKRVMMLFAFIGLGAISYLITAIVFGLRLRHLRASV >Mature_518_residues SKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEGAFSQAFVPVLTEYHASGDDNK TRELIAKASGTLGVLVTIVTFFGIIGSGVVTALFGAGWFMDWLNDGPAAPKFELASFLLKITFPYLWFITFVALSGAILN TLGKFAVSSFTPVFLNIAIIACAYFVSPNLEQPEIGLAIGVFLGGLIQFLFQLPFLYKAKMLVRPQWGWNDPGVVKIRTL MIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPALSRKHVDAEGDGFSQTMDWGVR MVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHQASLSLLAYASGLLNFMLIKVLAPGYYARQDTKTPVRYGIIAMV TNMFFNAIFAYFYGYVGLAMATALSALVNMVLLYRGLHLANVYKLSKETVFFVLKLIVSGGVMVSILLWLMPSMSIWLEW DLAKRVMMLFAFIGLGAISYLITAIVFGLRLRHLRASV
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=511, Percent_Identity=40.5088062622309, Blast_Score=374, Evalue=1e-105,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 57061; Mature: 56930
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC AFSQAFVPVLTEYHASGDDNKTRELIAKASGTLGVLVTIVTFFGIIGSGVVTALFGAGWF CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDWLNDGPAAPKFELASFLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNIAI HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IACAYFVSPNLEQPEIGLAIGVFLGGLIQFLFQLPFLYKAKMLVRPQWGWNDPGVVKIRT HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEHHH LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPAL HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH SRKHVDAEGDGFSQTMDWGVRMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHQAS HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LSLLAYASGLLNFMLIKVLAPGYYARQDTKTPVRYGIIAMVTNMFFNAIFAYFYGYVGLA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MATALSALVNMVLLYRGLHLANVYKLSKETVFFVLKLIVSGGVMVSILLWLMPSMSIWLE HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEE WDLAKRVMMLFAFIGLGAISYLITAIVFGLRLRHLRASV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SKRLLRSGLIVSIMTLVSRVLGLVRDVVVANLMGAGASADVFFFANKIPNFLRRLFAEG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC AFSQAFVPVLTEYHASGDDNKTRELIAKASGTLGVLVTIVTFFGIIGSGVVTALFGAGWF CHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDWLNDGPAAPKFELASFLLKITFPYLWFITFVALSGAILNTLGKFAVSSFTPVFLNIAI HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH IACAYFVSPNLEQPEIGLAIGVFLGGLIQFLFQLPFLYKAKMLVRPQWGWNDPGVVKIRT HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEHHH LMIPALFGVSVSQINLLFDTFIASFLATGSISWLYYSDRLLEFPLGLFGIAIATVILPAL HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH SRKHVDAEGDGFSQTMDWGVRMVILLGIPAMLGLMVLAKPMLMVLFMRGEFSPNDVHQAS HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LSLLAYASGLLNFMLIKVLAPGYYARQDTKTPVRYGIIAMVTNMFFNAIFAYFYGYVGLA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MATALSALVNMVLLYRGLHLANVYKLSKETVFFVLKLIVSGGVMVSILLWLMPSMSIWLE HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEE WDLAKRVMMLFAFIGLGAISYLITAIVFGLRLRHLRASV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9457888; 10952301 [H]