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The map label for this gene is rraB

Identifier: 59711016

GI number: 59711016

Start: 437890

End: 438306

Strand: Direct

Name: rraB

Synonym: VF_0409

Alternate gene names: 59711016

Gene position: 437890-438306 (Clockwise)

Preceding gene: 59711010

Following gene: 59711017

Centisome position: 15.11

GC content: 38.13

Gene sequence:

>417_bases
ATGTCTCAAGAAGATGAATATCTATCGGTTGAACAATTTCTTGAATTACAAAAAGCAGAAACTCGTGAAATTATCGAGTC
GCTAAAAGCCGATGGTAGTGAGCCTGATGCACTGTATGCGATTGAGCACCACTTAATGGCTGAAGATTTTAAAGCACTTG
AAAATGCAGTTGTTGAAGCATTTAAAATGGGCTTTGAAGTATTAGAAGCTGAAGAGCTAGAAGATGAAGATGGTGCTAAA
ATCTTATGTTGTGATGCCGTGATGGATTCAGCATTAGACGCAGAAGTAATCGATGCTCAAGTTGAAAAATTAGTAAATCT
TGCTGAAAAGTACGACATCATTTATGACGGTTGGGGTACTTACTACGAAGGCGAAGATGCTGAGTACGATGTGATTGAAG
ATGGTGATGAAGATTAA

Upstream 100 bases:

>100_bases
TTAATTTTTCTTTACTTATTGAAGTGCTAGGGGATTTGCTTAGTACAGGCTATAATGACTGAGTCTTATTTTTTATTACA
TACAGTGTGGAGCATTAACT

Downstream 100 bases:

>100_bases
TTCATAGCCACTAAAGAACATAGATGCCCTAGATGTGAATCATGTCTGGGGCATTTTTTTAAGGATGAATATGACGATAA
ACTCAAGAATTATATTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSQEDEYLSVEQFLELQKAETREIIESLKADGSEPDALYAIEHHLMAEDFKALENAVVEAFKMGFEVLEAEELEDEDGAK
ILCCDAVMDSALDAEVIDAQVEKLVNLAEKYDIIYDGWGTYYEGEDAEYDVIEDGDED

Sequences:

>Translated_138_residues
MSQEDEYLSVEQFLELQKAETREIIESLKADGSEPDALYAIEHHLMAEDFKALENAVVEAFKMGFEVLEAEELEDEDGAK
ILCCDAVMDSALDAEVIDAQVEKLVNLAEKYDIIYDGWGTYYEGEDAEYDVIEDGDED
>Mature_137_residues
SQEDEYLSVEQFLELQKAETREIIESLKADGSEPDALYAIEHHLMAEDFKALENAVVEAFKMGFEVLEAEELEDEDGAKI
LCCDAVMDSALDAEVIDAQVEKLVNLAEKYDIIYDGWGTYYEGEDAEYDVIEDGDED

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family

Homologues:

Organism=Escherichia coli, GI1790704, Length=110, Percent_Identity=62.7272727272727, Blast_Score=141, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAB_VIBFM (B5F9Q2)

Other databases:

- EMBL:   CP001139
- RefSeq:   YP_002155165.1
- ProteinModelPortal:   B5F9Q2
- SMR:   B5F9Q2
- GeneID:   6807252
- GenomeReviews:   CP001139_GR
- KEGG:   vfm:VFMJ11_0399
- HOGENOM:   HBG297993
- OMA:   YTIEHHF
- ProtClustDB:   PRK11191
- HAMAP:   MF_01888
- InterPro:   IPR009671
- InterPro:   IPR016716
- Gene3D:   G3DSA:3.30.70.970
- PIRSF:   PIRSF018193

Pfam domain/function: PF06877 DUF1260; SSF89946 DUF1260

EC number: NA

Molecular weight: Translated: 15588; Mature: 15457

Theoretical pI: Translated: 3.53; Mature: 3.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQEDEYLSVEQFLELQKAETREIIESLKADGSEPDALYAIEHHLMAEDFKALENAVVEA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FKMGFEVLEAEELEDEDGAKILCCDAVMDSALDAEVIDAQVEKLVNLAEKYDIIYDGWGT
HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
YYEGEDAEYDVIEDGDED
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQEDEYLSVEQFLELQKAETREIIESLKADGSEPDALYAIEHHLMAEDFKALENAVVEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FKMGFEVLEAEELEDEDGAKILCCDAVMDSALDAEVIDAQVEKLVNLAEKYDIIYDGWGT
HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC
YYEGEDAEYDVIEDGDED
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA