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The map label for this gene is kdsD [H]

Identifier: 59710999

GI number: 59710999

Start: 424729

End: 425703

Strand: Reverse

Name: kdsD [H]

Synonym: VF_0392

Alternate gene names: 59710999

Gene position: 425703-424729 (Counterclockwise)

Preceding gene: 59711000

Following gene: 59710998

Centisome position: 14.69

GC content: 39.08

Gene sequence:

>975_bases
ATGGCAACTCAGTTTGATTTCTGCAAAGCAGGAAAAAATGTTCTTCAAATTGAAATCGATGCTCTTACCCAACTCAGCAA
TTACATTAACGATGACTTCACTAAAGCGTGTCAATTAATGCTTGAATGCAAGCAAAAAGTCGTTGTTATGGGAATGGGTA
AATCAGGTCACATTGGTAATAAGATTGCAGCTACCTTAGCAAGTACAGGCACTCCCTCTTTCTTTGTACACCCTGGCGAA
GCAAGCCATGGTGATTTAGGCATGATTGAAAAAGGCGATATTGTTATTGCTATTTCTAACTCAGGTGAAGCGTCTGAAAT
TCTTGCTTTACTGCCAGTAATTAAACGTTTAGGTATCACTTTAATTACAATGACAGGTAAACCGGAATCTAGCATGGCAA
AAGTCGCTGATGTGAACCTTCAAATTACGGTTCCTCAAGAAGCTTGCCCTCTTGGTTTAGCGCCAACATCAAGTACAACA
GCAACCCTTGCTATGGGAGACGCTTTTGCTGTTGCGCTTCTTCAAGCAAGAGGCTTTACTGCTGATGACTTTGCTTTATC
ACATCCAGGTGGCGCTTTAGGTCGTAAATTACTACTCTTATTATCAGACATCATGCATACAGGTGATGAATTACCAATGG
TTACGGCTGATGCTCTTATTAAAACAGCACTTTTAGAAGTGTCTGAAAAAGGGTTAGGAATGACAGCTATCGTTGATAAC
GAGCAAAAAGTAATTGGTATCTTCACTGATGGTGATTTACGTCGCCTTTTAGATAATAAGATCGATATCCATACTCAAAC
TATTGGAGAAGTAATGACACACTCTCCAGCGGTTGCTAATCCAAACTTACTTGCTGTTGAAGGTCTAAACCTAATGCAAG
ATAAGAAAATAAATGGATTATTACTTTGTGATGAAACTCATCGTTTAGTTGGTGCATTGAATATGCATGACTTATTAAAA
GCGGGAGTGATGTAA

Upstream 100 bases:

>100_bases
CCTACTCAATATTGAACTAGCTCTGGCAAATGGCATAATATTTGTATAGGCTATTCCTCTAAATCATAAATTCCGCTCAA
ATACAGCAAGGTGGTAACCG

Downstream 100 bases:

>100_bases
TGACAACAAAATTAGTTTCAACTCTGTATGGCCAAGTTGAAGAGTCTATCTTTAACATAGCAAAAGAAATCAAGCTTCTA
ATTTGTGATGTTGATGGCGT

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MATQFDFCKAGKNVLQIEIDALTQLSNYINDDFTKACQLMLECKQKVVVMGMGKSGHIGNKIAATLASTGTPSFFVHPGE
ASHGDLGMIEKGDIVIAISNSGEASEILALLPVIKRLGITLITMTGKPESSMAKVADVNLQITVPQEACPLGLAPTSSTT
ATLAMGDAFAVALLQARGFTADDFALSHPGGALGRKLLLLLSDIMHTGDELPMVTADALIKTALLEVSEKGLGMTAIVDN
EQKVIGIFTDGDLRRLLDNKIDIHTQTIGEVMTHSPAVANPNLLAVEGLNLMQDKKINGLLLCDETHRLVGALNMHDLLK
AGVM

Sequences:

>Translated_324_residues
MATQFDFCKAGKNVLQIEIDALTQLSNYINDDFTKACQLMLECKQKVVVMGMGKSGHIGNKIAATLASTGTPSFFVHPGE
ASHGDLGMIEKGDIVIAISNSGEASEILALLPVIKRLGITLITMTGKPESSMAKVADVNLQITVPQEACPLGLAPTSSTT
ATLAMGDAFAVALLQARGFTADDFALSHPGGALGRKLLLLLSDIMHTGDELPMVTADALIKTALLEVSEKGLGMTAIVDN
EQKVIGIFTDGDLRRLLDNKIDIHTQTIGEVMTHSPAVANPNLLAVEGLNLMQDKKINGLLLCDETHRLVGALNMHDLLK
AGVM
>Mature_323_residues
ATQFDFCKAGKNVLQIEIDALTQLSNYINDDFTKACQLMLECKQKVVVMGMGKSGHIGNKIAATLASTGTPSFFVHPGEA
SHGDLGMIEKGDIVIAISNSGEASEILALLPVIKRLGITLITMTGKPESSMAKVADVNLQITVPQEACPLGLAPTSSTTA
TLAMGDAFAVALLQARGFTADDFALSHPGGALGRKLLLLLSDIMHTGDELPMVTADALIKTALLEVSEKGLGMTAIVDNE
QKVIGIFTDGDLRRLLDNKIDIHTQTIGEVMTHSPAVANPNLLAVEGLNLMQDKKINGLLLCDETHRLVGALNMHDLLKA
GVM

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=320, Percent_Identity=65, Blast_Score=419, Evalue=1e-118,
Organism=Escherichia coli, GI87082151, Length=315, Percent_Identity=46.984126984127, Blast_Score=287, Evalue=8e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34295; Mature: 34164

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQFDFCKAGKNVLQIEIDALTQLSNYINDDFTKACQLMLECKQKVVVMGMGKSGHIGN
CCCCCCHHHCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCH
KIAATLASTGTPSFFVHPGEASHGDLGMIEKGDIVIAISNSGEASEILALLPVIKRLGIT
HHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHCCEE
LITMTGKPESSMAKVADVNLQITVPQEACPLGLAPTSSTTATLAMGDAFAVALLQARGFT
EEEEECCCCHHHHHEEECEEEEEECHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
ADDFALSHPGGALGRKLLLLLSDIMHTGDELPMVTADALIKTALLEVSEKGLGMTAIVDN
CCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
EQKVIGIFTDGDLRRLLDNKIDIHTQTIGEVMTHSPAVANPNLLAVEGLNLMQDKKINGL
CCEEEEEEECCHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCCEE
LLCDETHRLVGALNMHDLLKAGVM
EEECCHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
ATQFDFCKAGKNVLQIEIDALTQLSNYINDDFTKACQLMLECKQKVVVMGMGKSGHIGN
CCCCCHHHCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEEECCCCCCCCH
KIAATLASTGTPSFFVHPGEASHGDLGMIEKGDIVIAISNSGEASEILALLPVIKRLGIT
HHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHHHHHCCEE
LITMTGKPESSMAKVADVNLQITVPQEACPLGLAPTSSTTATLAMGDAFAVALLQARGFT
EEEEECCCCHHHHHEEECEEEEEECHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHCCCC
ADDFALSHPGGALGRKLLLLLSDIMHTGDELPMVTADALIKTALLEVSEKGLGMTAIVDN
CCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
EQKVIGIFTDGDLRRLLDNKIDIHTQTIGEVMTHSPAVANPNLLAVEGLNLMQDKKINGL
CCEEEEEEECCHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCCEE
LLCDETHRLVGALNMHDLLKAGVM
EEECCHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]