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The map label for this gene is lptC [H]

Identifier: 59710997

GI number: 59710997

Start: 423609

End: 424172

Strand: Reverse

Name: lptC [H]

Synonym: VF_0390

Alternate gene names: 59710997

Gene position: 424172-423609 (Counterclockwise)

Preceding gene: 59710998

Following gene: 59710996

Centisome position: 14.64

GC content: 37.94

Gene sequence:

>564_bases
ATGAGCTTAAAACATCTTTTCATGGCCGTTCTATTGATGATTTGTAGCTGGTCAGGCTACAACTTATATTATGACTACGT
GAAAGGTGAACAACAGACAACACCAGATCAACAAGTCCCTGTTTTTACAGGTAAAGGGATCACGAATAATAACTACGATG
TAAGTGGTATTCGTAACTATCAAATAAATGCAAAAGCATTAGCTCGATTTGGTAAGACTGGTGAAACGAACTTCACAACA
CCTCACCTTTTTGTATTCAAAGATGGTGAATTAAAAGAATGGGAGATCATCTCCGATCTCGGCGTTTTAAATAAAAAGCA
CGAACTTTACTTAAGCGGTAACGTCATTGTTAAAAACCTGCTGCCTGACGCTGCATTTGAAACAATGACAACAGACAGTA
TGAAGATCGAGCTAACGACAAAAGACTTTATGACAGAGGATGTTGTTAATCTCATTGGCCCTACTTTTGAAACAACAGGA
GTAGGAATGAAAGGTAACTTCACAAGCCAAGAAGCAACCCTATTAGAAAATGTACAAGGTATCTATGAAGCTTTCACACG
TTAG

Upstream 100 bases:

>100_bases
ATGTAACAACCATAAAAGGTGGTCATGGTGCTGTTCGTGAAGTAAGCGACCTGATCCTAGAAGCAAAAGGTGAATTAGAG
CAACATAAAGGTTTGAGCAT

Downstream 100 bases:

>100_bases
TCTACTTGCAAGTCTACTTTTTAGCGCTTCAAGCTGGGCATTGAGTAGCGATACAGAACAACCGATCCACATTAATTCAA
ATTCACAGAATTTTGATATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSLKHLFMAVLLMICSWSGYNLYYDYVKGEQQTTPDQQVPVFTGKGITNNNYDVSGIRNYQINAKALARFGKTGETNFTT
PHLFVFKDGELKEWEIISDLGVLNKKHELYLSGNVIVKNLLPDAAFETMTTDSMKIELTTKDFMTEDVVNLIGPTFETTG
VGMKGNFTSQEATLLENVQGIYEAFTR

Sequences:

>Translated_187_residues
MSLKHLFMAVLLMICSWSGYNLYYDYVKGEQQTTPDQQVPVFTGKGITNNNYDVSGIRNYQINAKALARFGKTGETNFTT
PHLFVFKDGELKEWEIISDLGVLNKKHELYLSGNVIVKNLLPDAAFETMTTDSMKIELTTKDFMTEDVVNLIGPTFETTG
VGMKGNFTSQEATLLENVQGIYEAFTR
>Mature_186_residues
SLKHLFMAVLLMICSWSGYNLYYDYVKGEQQTTPDQQVPVFTGKGITNNNYDVSGIRNYQINAKALARFGKTGETNFTTP
HLFVFKDGELKEWEIISDLGVLNKKHELYLSGNVIVKNLLPDAAFETMTTDSMKIELTTKDFMTEDVVNLIGPTFETTGV
GMKGNFTSQEATLLENVQGIYEAFTR

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=178, Percent_Identity=31.4606741573034, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 21063; Mature: 20932

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKHLFMAVLLMICSWSGYNLYYDYVKGEQQTTPDQQVPVFTGKGITNNNYDVSGIRNY
CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEE
QINAKALARFGKTGETNFTTPHLFVFKDGELKEWEIISDLGVLNKKHELYLSGNVIVKNL
EECHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCEEEEHH
LPDAAFETMTTDSMKIELTTKDFMTEDVVNLIGPTFETTGVGMKGNFTSQEATLLENVQG
CCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
IYEAFTR
HHHHHCC
>Mature Secondary Structure 
SLKHLFMAVLLMICSWSGYNLYYDYVKGEQQTTPDQQVPVFTGKGITNNNYDVSGIRNY
CHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEE
QINAKALARFGKTGETNFTTPHLFVFKDGELKEWEIISDLGVLNKKHELYLSGNVIVKNL
EECHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCEEEEHH
LPDAAFETMTTDSMKIELTTKDFMTEDVVNLIGPTFETTGVGMKGNFTSQEATLLENVQG
CCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
IYEAFTR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]