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The map label for this gene is ytfM [H]

Identifier: 59710939

GI number: 59710939

Start: 340801

End: 342522

Strand: Direct

Name: ytfM [H]

Synonym: VF_0332

Alternate gene names: 59710939

Gene position: 340801-342522 (Clockwise)

Preceding gene: 59710937

Following gene: 59710940

Centisome position: 11.76

GC content: 38.73

Gene sequence:

>1722_bases
ATGATAAAGAAGTTACCTTTATTCATTATAGTCTGTTTGCTTGCTATCTCATCTCAAGCCTTAGCAGAAACAGAACTAGA
AATAGAGGGATTAGAAGGACCTTTACTGAGTAATGTTGAAGCATATATCTCAGGTATTCCAGAAGAAGACTATTCTGTCT
CTCTTCGTTTCCAAGCTCGTCTTCAAGAAAGTATTACTGATGCCTTAAAAGCTCTTGGTTATTACCAATCAACAACAACC
TTTGTTGTTGAAGGGGATACATCTGATCGTACTTTGCTCGTAAATATAGACGCAGGCCAGCCTGTAATTATCTATGTTAG
TGATATAGTAATTAGTGGTGAAGCTGCGGCAGATGAGGATTTTATTAACGCGGTCGATAACTCTGGATTAAATCTTGGTC
AAGTGATTAACCATGGTCGATATGAAAGTTTAAAAAGTACATTACAAAATCTAGCCTTAAGAAAAGGGTATTTTGATGGC
GACTTTACAACGAATAGATTGGAAATCGCTCCTGGACGACATCAGGCTATAGTTCGAATTCATTATGATAGTGGTAAACG
ATACAGTTTTGGTGAAACATCGATTGATGGTAGTCAAATTGAAGAAAAAAGAGTTCGTTCTATTATTCCATTTCAAGCAG
GAGACCCTTATCTTGCAAGTCAAGTTGGTGAATTAAATCAATATCTTTCAAATACAGAGTGGTTTTCTTCTGTTTATGTT
GAGCCAGATATCGACGCAGTTGGAAAAACATATCAATTGCCAATGAAAGTTCATCTTTCTCCTCAAGTAAGAAATCAATT
AGAAACAAGTATTGGTTATGCAACTGACGTTGGTGCTAGGGGAAAAATTCGTTGGAAAAAGCCGTGGTTAAATCCGGAAG
GACATAGTTTAGATACCGCCCTTTCAATTTCAAAACCAGAACAAGAAGCAACCATTTCTTATAAGATCCCGTTAGAGCAA
GTTTTAAAAGATTACTACGTTGTTAAATATGGACTTAAAAACGTAGATAACAATGATACGGATAGTTTGGAATCGAATTT
AGCTTTTGAAAGACACTGGGTTTATGACTCAGGTTGGCATCGAACTATCTATACTCGTTTTTTATATGAAGAATTTACTC
AAGGTGTACAAGATGGCACTGCATGGTTGGTGCTACCGGGGATCTCTTTTTCTAAGAGTCGCTCACGTGGTGGTACGATG
CCAATGTGGGGAGATAAAAAAGCATTTACCATTGAGGCGACAGATCAAGCTTTAACATCGGATGTGAAGTTATTACGTTT
ACAAGCTCAAGGTGCGATTGTTCGTAGTATCGGAGAAAATCACAGAGGTGTAGCTCGTGCAGATATTGGTGCAATATATA
CTGATGATTTTTATAAGTTACCGCCATCAATTCGTTTTTTCGCTGGTGGTGATAATAGTATTCGTGGTTATGGATATGAA
GAAGTATCTCCAAAAGACAGTGAAGGTTATTTAACTGGTGGCCAATATATGGCGACAGCTAGCCTTGAGTATCAATATCG
AGTAGTCGGTAATTGGTGGGTTGCAACGTTTGTTGATTATGGTGATGCATGGTTAGATACTCCAGATTGGAAAATGGGTA
CCGGTGTGGGTATACGATGGGCTTCGCCTGTAGGTCCAGTTCGACTCGATTTCGCATGGGGGCTTGATGCTGAGCCTGGA
GACGAATTTAAAATCCACTTTACCTTGGGGCCTGAAGTATGA

Upstream 100 bases:

>100_bases
CTGAGTTAATATAGAAGACATTTATCTTGTGCTACTCTATAAAACGAGTAAATTACCATTGCATATAATGTATTAATGAA
TCAATAGAATAATTACAAGT

Downstream 100 bases:

>100_bases
GTTCCATTGAAATGAACGAAGAACATAACAATCAAGAGTTGAAGAAAAAACGACGTTTTAGTCGTCATTGTCTTTGTTTT
GCTCTTTTTTTTCCATCAAT

Product: outer membrane protein and surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 573; Mature: 573

Protein sequence:

>573_residues
MIKKLPLFIIVCLLAISSQALAETELEIEGLEGPLLSNVEAYISGIPEEDYSVSLRFQARLQESITDALKALGYYQSTTT
FVVEGDTSDRTLLVNIDAGQPVIIYVSDIVISGEAAADEDFINAVDNSGLNLGQVINHGRYESLKSTLQNLALRKGYFDG
DFTTNRLEIAPGRHQAIVRIHYDSGKRYSFGETSIDGSQIEEKRVRSIIPFQAGDPYLASQVGELNQYLSNTEWFSSVYV
EPDIDAVGKTYQLPMKVHLSPQVRNQLETSIGYATDVGARGKIRWKKPWLNPEGHSLDTALSISKPEQEATISYKIPLEQ
VLKDYYVVKYGLKNVDNNDTDSLESNLAFERHWVYDSGWHRTIYTRFLYEEFTQGVQDGTAWLVLPGISFSKSRSRGGTM
PMWGDKKAFTIEATDQALTSDVKLLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
EVSPKDSEGYLTGGQYMATASLEYQYRVVGNWWVATFVDYGDAWLDTPDWKMGTGVGIRWASPVGPVRLDFAWGLDAEPG
DEFKIHFTLGPEV

Sequences:

>Translated_573_residues
MIKKLPLFIIVCLLAISSQALAETELEIEGLEGPLLSNVEAYISGIPEEDYSVSLRFQARLQESITDALKALGYYQSTTT
FVVEGDTSDRTLLVNIDAGQPVIIYVSDIVISGEAAADEDFINAVDNSGLNLGQVINHGRYESLKSTLQNLALRKGYFDG
DFTTNRLEIAPGRHQAIVRIHYDSGKRYSFGETSIDGSQIEEKRVRSIIPFQAGDPYLASQVGELNQYLSNTEWFSSVYV
EPDIDAVGKTYQLPMKVHLSPQVRNQLETSIGYATDVGARGKIRWKKPWLNPEGHSLDTALSISKPEQEATISYKIPLEQ
VLKDYYVVKYGLKNVDNNDTDSLESNLAFERHWVYDSGWHRTIYTRFLYEEFTQGVQDGTAWLVLPGISFSKSRSRGGTM
PMWGDKKAFTIEATDQALTSDVKLLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
EVSPKDSEGYLTGGQYMATASLEYQYRVVGNWWVATFVDYGDAWLDTPDWKMGTGVGIRWASPVGPVRLDFAWGLDAEPG
DEFKIHFTLGPEV
>Mature_573_residues
MIKKLPLFIIVCLLAISSQALAETELEIEGLEGPLLSNVEAYISGIPEEDYSVSLRFQARLQESITDALKALGYYQSTTT
FVVEGDTSDRTLLVNIDAGQPVIIYVSDIVISGEAAADEDFINAVDNSGLNLGQVINHGRYESLKSTLQNLALRKGYFDG
DFTTNRLEIAPGRHQAIVRIHYDSGKRYSFGETSIDGSQIEEKRVRSIIPFQAGDPYLASQVGELNQYLSNTEWFSSVYV
EPDIDAVGKTYQLPMKVHLSPQVRNQLETSIGYATDVGARGKIRWKKPWLNPEGHSLDTALSISKPEQEATISYKIPLEQ
VLKDYYVVKYGLKNVDNNDTDSLESNLAFERHWVYDSGWHRTIYTRFLYEEFTQGVQDGTAWLVLPGISFSKSRSRGGTM
PMWGDKKAFTIEATDQALTSDVKLLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
EVSPKDSEGYLTGGQYMATASLEYQYRVVGNWWVATFVDYGDAWLDTPDWKMGTGVGIRWASPVGPVRLDFAWGLDAEPG
DEFKIHFTLGPEV

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=572, Percent_Identity=44.4055944055944, Blast_Score=485, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 63954; Mature: 63954

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKLPLFIIVCLLAISSQALAETELEIEGLEGPLLSNVEAYISGIPEEDYSVSLRFQAR
CCCCHHHHHHHHHHHHCCHHHHHCEEEEECCCCCHHHCHHHHHCCCCCCCCEEEEEEHHH
LQESITDALKALGYYQSTTTFVVEGDTSDRTLLVNIDAGQPVIIYVSDIVISGEAAADED
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHH
FINAVDNSGLNLGQVINHGRYESLKSTLQNLALRKGYFDGDFTTNRLEIAPGRHQAIVRI
HHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEE
HYDSGKRYSFGETSIDGSQIEEKRVRSIIPFQAGDPYLASQVGELNQYLSNTEWFSSVYV
EECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEE
EPDIDAVGKTYQLPMKVHLSPQVRNQLETSIGYATDVGARGKIRWKKPWLNPEGHSLDTA
CCCHHHCCCEEECCEEEECCHHHHHHHHHHCCCEECCCCCCEEEEECCCCCCCCCCCCEE
LSISKPEQEATISYKIPLEQVLKDYYVVKYGLKNVDNNDTDSLESNLAFERHWVYDSGWH
EECCCCCCCCEEEEECCHHHHHHHHEEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCC
RTIYTRFLYEEFTQGVQDGTAWLVLPGISFSKSRSRGGTMPMWGDKKAFTIEATDQALTS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHC
DVKLLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
CEEEEEEECCCHHHHHCCCCCCCEEEECCCEEEECCCEECCCCEEEEECCCCCCCCCCCC
EVSPKDSEGYLTGGQYMATASLEYQYRVVGNWWVATFVDYGDAWLDTPDWKMGTGVGIRW
CCCCCCCCCEEECCCEEEEEEEEEEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCEEE
ASPVGPVRLDFAWGLDAEPGDEFKIHFTLGPEV
CCCCCCEEEEEEECCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MIKKLPLFIIVCLLAISSQALAETELEIEGLEGPLLSNVEAYISGIPEEDYSVSLRFQAR
CCCCHHHHHHHHHHHHCCHHHHHCEEEEECCCCCHHHCHHHHHCCCCCCCCEEEEEEHHH
LQESITDALKALGYYQSTTTFVVEGDTSDRTLLVNIDAGQPVIIYVSDIVISGEAAADED
HHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCHH
FINAVDNSGLNLGQVINHGRYESLKSTLQNLALRKGYFDGDFTTNRLEIAPGRHQAIVRI
HHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEEEE
HYDSGKRYSFGETSIDGSQIEEKRVRSIIPFQAGDPYLASQVGELNQYLSNTEWFSSVYV
EECCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEE
EPDIDAVGKTYQLPMKVHLSPQVRNQLETSIGYATDVGARGKIRWKKPWLNPEGHSLDTA
CCCHHHCCCEEECCEEEECCHHHHHHHHHHCCCEECCCCCCEEEEECCCCCCCCCCCCEE
LSISKPEQEATISYKIPLEQVLKDYYVVKYGLKNVDNNDTDSLESNLAFERHWVYDSGWH
EECCCCCCCCEEEEECCHHHHHHHHEEEEECCCCCCCCCCHHHHHCCCEEEEEEECCCCC
RTIYTRFLYEEFTQGVQDGTAWLVLPGISFSKSRSRGGTMPMWGDKKAFTIEATDQALTS
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHC
DVKLLRLQAQGAIVRSIGENHRGVARADIGAIYTDDFYKLPPSIRFFAGGDNSIRGYGYE
CEEEEEEECCCHHHHHCCCCCCCEEEECCCEEEECCCEECCCCEEEEECCCCCCCCCCCC
EVSPKDSEGYLTGGQYMATASLEYQYRVVGNWWVATFVDYGDAWLDTPDWKMGTGVGIRW
CCCCCCCCCEEECCCEEEEEEEEEEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCEEE
ASPVGPVRLDFAWGLDAEPGDEFKIHFTLGPEV
CCCCCCEEEEEEECCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]