| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is hepA [H]
Identifier: 59710877
GI number: 59710877
Start: 273931
End: 276789
Strand: Direct
Name: hepA [H]
Synonym: VF_0270
Alternate gene names: 59710877
Gene position: 273931-276789 (Clockwise)
Preceding gene: 59710876
Following gene: 59710878
Centisome position: 9.45
GC content: 40.99
Gene sequence:
>2859_bases ATGTCATTTGCTTTGGGACAACGTTGGATCAGTGATACAGAAAGTGATTTAGGTTTAGGTACGGTAGTGGCTGTTGATGA CAGAACCGTATCATTACTTTTTGCAGCATCAGAAGAAAACCGTTTATACGCAAAACACGATGCACCCGTTACCCGAGTGA TGTTCAATAAGGGAGATACCATTGAAAGCCATGAGGGCTGGTCACTTGATGTTGAAGACGTTATTGAAGAAGGTGGTTTA TTAACTTATATCGGTACTCGAGTTGATACTGACGAAGCCAATGTGGTACTTCGTGAGACGTTATTGAGTCATCAAATCCG TTTTAATAAACCTCAAGATAAATTATTTGCAGGTCAAATTGATCGTATGGATCGATTTGCTTTGCGTTTCCGTGCGCTTC AAAACCAATATGAACAACACAAAAGCCCGATGCGCGGTTTATGTGGCATGCGTGCAGGATTGATCCCTCACCAATTATTC ATTGCTCATGAAGTGGGCCGTCGTTATGCCCCACGTGTTTTATTAGCCGATGAAGTGGGCTTAGGTAAAACCATTGAAGC GGGTATGATCATTCACCAACAGGTGCTTTCTGGTCGTGCTGAGCGCGTATTGATTGTTGTACCTGAAACACTACAACATC AGTGGTTAGTTGAAATGATGCGTCGTTTTAACCTTCATTTTTCTATTTTTGATGAAGAGCGTTGTGTTGAAGCTTATGCC GATTCTGAAAACCCATTTGATACCGCACAATTTGTTTTATGTTCTTTAGACTTTATTCGTAAGAGTAAGCGTCGTTTTGA GCAAGTCGTTGAAGCCGATTGGGATTTGCTAGTTGTTGATGAAGCGCATCACTTAGAGTGGAATCAAACTAAGCCTAGTC GTGAATATCAAGTTATCGAAGCGATTGCAGAAGAAACGCCAGGAGTATTACTGCTAACAGCGACACCTGAGCAATTAGGC CATGAGAGTCACTTTGCTCGTTTACGTCTATTAGATCCTGATCGTTTTTATGATTATGACGCATTCGTAGAAGAAGAACG TCAATATCAACCTGTGGCTGATGCAGTAACGGCATTAATGAGCGGTGAAAAACTATCAAATGATGCGAAAAACCGTATTA CTGAACTGCTTTCTGAGCAAGATGTAGAGCCGCTATTTAGAATTATTGAATCATCAGCAGCAGAAGATGAACAAGCACAA GCTCGCCAAGAGTTAGTGGATAATTTAATGGACCGTCATGGTACGGGACGTGTGTTATTCCGTAATACTCGTGCAGCTAT TAAAGGTTTCCCACAGCGTAATCTTAATTTAATGCCAATGCCTTTACCATCTCAGTATGCTACGTCTATGCGTGTTGCAA CCATGATGGGTGGACGTATGACGGATGAAGCTCGTGCAATGAAGATGCTTTACCCAGAAGAAATCTTCCAAGAGTTTGAA GGTGATAGTGCGACGTGGTGGCAGTTTGACCCGCGTGTTAACTGGTTACTTGAATTACTGAAAGAAAACCGTAATGAGAA GGTGCTTATTATTGCATCTCGAGCTTCAACTGCATTACAACTTGAGCAAGCATTACGTGAGCGTGAAGGTATTCGTGGTA CGGTTTTCCATGAAGGTATGTCAATTATTGAACGTGATAAAGCGGCAGCTTACTTCGCACAAGAAGAAGGCGGCGCACAG GTATTGATTTGTTCTGAGATTGGTTCTGAAGGTCGTAACTTCCAGTTTGCTAATCAACTTGTCATGTTTGATTTACCGTT TAACCCTGACTTACTTGAGCAACGTATTGGTCGTTTGGATCGCATTGGTCAAAAACGCGATATTGAAATTCATGTTCCTT ACCTACAAGGTACATCTCAAGAATTGCTTGCTCGTTGGTTTGATGAAGGTTTAAATGCATTTGGTGAAACGTGTCCAACA GGTCGTGCTGTTTATGACAAATTTGCTGATGCAATTATTGCTATCTTAGCAACAGGTAAATCTGATGGCTTAGAGTCATT AATTGAAGAGTCGGCTACATTAAATAAAGCGCTAAAATCACAATTAGAGCAAGGTCGTGACCGTTTATTAGAAGTGCATT CTAATGGTGGTGATAAAGCGAAAGAAATTGCAGAGCAAATTGCGGCAACCGACGGCGATACAAATCTTGTTAATTTTGCA TTAAACCTATTCGATACCATTGGTTTAAACCAAGATGATAAAGGTGAAAATGCCATTGTTGTCACTCCAGCGGAAAACAT GTTGGTATCAAGTTACCCTGGCTTACCTTATGAAGGTTGTACTATTACGTTTGATCGTGAAACCGCGCTTTCTCGTGAAG ATATGAACTTGATCAGTTGGGAGCACCCAATGATTCAAGGTGGTATTGATCTTGTTTTAACCGAAGGGGTAGGGGCAACA GCGGTTTCTTTATTGAAGAATAAAGCATTACCAGCAGGCACTTTATTACTGGAATTGGTTTATGTAGTAGATGCGCAAGC TCCTAAACAGAGTGGTATTGCTCGCTTCTTACCTAAAACGCCTATTCGTATCATGATGGATGGTAAAGGTAATGATCTTT CTGCTCAGGTTGAATTTGAAAGCTTTAACCGTCAATTAAGCCCAGTTAATCGTCATATGGCGAGTAAGTTGGTTAATTCG GTTCAAAAAGAGATCCATGGATTAATCGATAAAGCGGAAATTAGCATGGAAGAGCGTTTAGAAAGCGTTCGCACTGATGC TGAAAAAGAGATGAAAGCAGCACTTAATTCAGAGCTTGAACGTTTACAAGCTTTGAAGGCAGTCAACCCCAATATTCGTG ATGAAGAGTTAACTCAAATTGGAAACTCAAATGAGCGAACTATCTGGTTATATTGGTAA
Upstream 100 bases:
>100_bases TTTTGAGCCTTAACCTTTGCGGGTTGTCTATTCTTGGCTTTCGAAAAAATTCTCATTCCATATCTTATAAAACAAATTAA TTTTGAGGTGCGTTACCACT
Downstream 100 bases:
>100_bases AGCACAAGTTCAGTTAGATTCATTACGTCTAATTGTAGTGAGCCATAATTAAGTAACATCATGCTCTCTGAATAATGGTA TGTTTCAGAGAGCATGCCTA
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 952; Mature: 951
Protein sequence:
>952_residues MSFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPVTRVMFNKGDTIESHEGWSLDVEDVIEEGGL LTYIGTRVDTDEANVVLRETLLSHQIRFNKPQDKLFAGQIDRMDRFALRFRALQNQYEQHKSPMRGLCGMRAGLIPHQLF IAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLSGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYA DSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIEAIAEETPGVLLLTATPEQLG HESHFARLRLLDPDRFYDYDAFVEEERQYQPVADAVTALMSGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQ ARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMMGGRMTDEARAMKMLYPEEIFQEFE GDSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKAAAYFAQEEGGAQ VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPT GRAVYDKFADAIIAILATGKSDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKAKEIAEQIAATDGDTNLVNFA LNLFDTIGLNQDDKGENAIVVTPAENMLVSSYPGLPYEGCTITFDRETALSREDMNLISWEHPMIQGGIDLVLTEGVGAT AVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKTPIRIMMDGKGNDLSAQVEFESFNRQLSPVNRHMASKLVNS VQKEIHGLIDKAEISMEERLESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWLYW
Sequences:
>Translated_952_residues MSFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPVTRVMFNKGDTIESHEGWSLDVEDVIEEGGL LTYIGTRVDTDEANVVLRETLLSHQIRFNKPQDKLFAGQIDRMDRFALRFRALQNQYEQHKSPMRGLCGMRAGLIPHQLF IAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLSGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYA DSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIEAIAEETPGVLLLTATPEQLG HESHFARLRLLDPDRFYDYDAFVEEERQYQPVADAVTALMSGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQ ARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMMGGRMTDEARAMKMLYPEEIFQEFE GDSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKAAAYFAQEEGGAQ VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPT GRAVYDKFADAIIAILATGKSDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKAKEIAEQIAATDGDTNLVNFA LNLFDTIGLNQDDKGENAIVVTPAENMLVSSYPGLPYEGCTITFDRETALSREDMNLISWEHPMIQGGIDLVLTEGVGAT AVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKTPIRIMMDGKGNDLSAQVEFESFNRQLSPVNRHMASKLVNS VQKEIHGLIDKAEISMEERLESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWLYW >Mature_951_residues SFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPVTRVMFNKGDTIESHEGWSLDVEDVIEEGGLL TYIGTRVDTDEANVVLRETLLSHQIRFNKPQDKLFAGQIDRMDRFALRFRALQNQYEQHKSPMRGLCGMRAGLIPHQLFI AHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLSGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYAD SENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIEAIAEETPGVLLLTATPEQLGH ESHFARLRLLDPDRFYDYDAFVEEERQYQPVADAVTALMSGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQA RQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMMGGRMTDEARAMKMLYPEEIFQEFEG DSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKAAAYFAQEEGGAQV LICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPTG RAVYDKFADAIIAILATGKSDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKAKEIAEQIAATDGDTNLVNFAL NLFDTIGLNQDDKGENAIVVTPAENMLVSSYPGLPYEGCTITFDRETALSREDMNLISWEHPMIQGGIDLVLTEGVGATA VSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKTPIRIMMDGKGNDLSAQVEFESFNRQLSPVNRHMASKLVNSV QKEIHGLIDKAEISMEERLESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWLYW
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=949, Percent_Identity=64.4889357218124, Blast_Score=1298, Evalue=0.0, Organism=Caenorhabditis elegans, GI17540630, Length=587, Percent_Identity=22.6575809199319, Blast_Score=89, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 107560; Mature: 107429
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPVTRVMFNKGDT CCCCCCCHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEECCCCEEEEEECCCCC IESHEGWSLDVEDVIEEGGLLTYIGTRVDTDEANVVLRETLLSHQIRFNKPQDKLFAGQI CCCCCCCCCCHHHHHHCCCEEEEECCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH DRMDRFALRFRALQNQYEQHKSPMRGLCGMRAGLIPHQLFIAHEVGRRYAPRVLLADEVG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCC LGKTIEAGMIIHQQVLSGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYA CCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHC DSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH AIAEETPGVLLLTATPEQLGHESHFARLRLLDPDRFYDYDAFVEEERQYQPVADAVTALM HHHHCCCCEEEEEECHHHHCCCCHHEEEEEECCHHHCCHHHHHHHHHCCCHHHHHHHHHH SGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQARQELVDNLMDRHGTGRVLF CCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEE RNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMMGGRMTDEARAMKMLYPEEIFQEFE ECCHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHC GDSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGM CCCCEEEEECCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHH SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD HHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCEEEECEEEEEECCCCHHHHHHHHHHHH RIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPTGRAVYDKFADAIIAILATGK HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC SDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKAKEIAEQIAATDGDTNLVNFA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHHCCCCCCHHHHHH LNLFDTIGLNQDDKGENAIVVTPAENMLVSSYPGLPYEGCTITFDRETALSREDMNLISW HHHHHHCCCCCCCCCCCEEEEECCCCHHEECCCCCCCCCEEEEECCHHHCCCCCCCHHCC EHPMIQGGIDLVLTEGVGATAVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKT CCCHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCC PIRIMMDGKGNDLSAQVEFESFNRQLSPVNRHMASKLVNSVQKEIHGLIDKAEISMEERL CEEEEECCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWLYW HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEC >Mature Secondary Structure SFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPVTRVMFNKGDT CCCCCCHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEECCCCEEEEEECCCCC IESHEGWSLDVEDVIEEGGLLTYIGTRVDTDEANVVLRETLLSHQIRFNKPQDKLFAGQI CCCCCCCCCCHHHHHHCCCEEEEECCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH DRMDRFALRFRALQNQYEQHKSPMRGLCGMRAGLIPHQLFIAHEVGRRYAPRVLLADEVG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCC LGKTIEAGMIIHQQVLSGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYA CCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHC DSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHH AIAEETPGVLLLTATPEQLGHESHFARLRLLDPDRFYDYDAFVEEERQYQPVADAVTALM HHHHCCCCEEEEEECHHHHCCCCHHEEEEEECCHHHCCHHHHHHHHHCCCHHHHHHHHHH SGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQARQELVDNLMDRHGTGRVLF CCCHHCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEE RNTRAAIKGFPQRNLNLMPMPLPSQYATSMRVATMMGGRMTDEARAMKMLYPEEIFQEFE ECCHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHC GDSATWWQFDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGM CCCCEEEEECCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHH SIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD HHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCEEEECEEEEEECCCCHHHHHHHHHHHH RIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPTGRAVYDKFADAIIAILATGK HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC SDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKAKEIAEQIAATDGDTNLVNFA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHHCCCCCCHHHHHH LNLFDTIGLNQDDKGENAIVVTPAENMLVSSYPGLPYEGCTITFDRETALSREDMNLISW HHHHHHCCCCCCCCCCCEEEEECCCCHHEECCCCCCCCCEEEEECCHHHCCCCCCCHHCC EHPMIQGGIDLVLTEGVGATAVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKT CCCHHHCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCC PIRIMMDGKGNDLSAQVEFESFNRQLSPVNRHMASKLVNSVQKEIHGLIDKAEISMEERL CEEEEECCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWLYW HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA