| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59710704
Identifier: 59710704
GI number: 59710704
Start: 113550
End: 114086
Strand: Reverse
Name: 59710704
Synonym: VF_0097
Alternate gene names: NA
Gene position: 114086-113550 (Counterclockwise)
Preceding gene: 59710705
Following gene: 59710703
Centisome position: 3.94
GC content: 41.15
Gene sequence:
>537_bases ATGTCTTATAAACAGCTTATATTTCTTATCTTATTCTCTACATCTGCCTTTGCTGGTACGGTGTATACGTGGGAAGACAG TGATGGAACAAGGCATTTCAGTGATTCTCCACCACCAACAAACATCAAATCGAAACAACTCTCTTTATCTACTAGTGTTC CTTTAGAGGAATCTTATGATGATACGGCTACATCCGTAGAGCCTGTCGCAAAAAAAGCCAAATCCAAAACACCAGAGAAA AAAGACAAAAAGCTTGAGATTTCATTTAGCAACTTGCAACAAGAAGAAACCATTCGAAGCTCTCGTGGACACATCACCGT ACTAACGGATTTAAACCGTAAGTTATCCATTGATGAAAAACTACAGCTTATGCTTGATGGTTCCCCTTACGGCCTACCTC AAGCATCAACAGAGTGGAAGCTAACAGGCATAGATCGAGGTACCCACCTTATTACTGTTGTTGCTACCAAAGACGGCAAG AGAATTGCATCATCACCTATTATCACCGTGTATCTACACCGACCGTCTGCAAACTAG
Upstream 100 bases:
>100_bases CTCTGTAGTATCGTATGAAGTCATAAGATAATGGCAATCCAATTAACTGAATAACCAAGACAGTTAATTCGATCAGCAAC GCATCATCCATGGTGGTAAT
Downstream 100 bases:
>100_bases AGGAATTCATATAGTTCCATTCTAAAAAGCAAGGTATGATGCACCATGATGGTGCATTTATTAATTTGCTATAAGGATGA TGGCGTTAACGATGGATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MSYKQLIFLILFSTSAFAGTVYTWEDSDGTRHFSDSPPPTNIKSKQLSLSTSVPLEESYDDTATSVEPVAKKAKSKTPEK KDKKLEISFSNLQQEETIRSSRGHITVLTDLNRKLSIDEKLQLMLDGSPYGLPQASTEWKLTGIDRGTHLITVVATKDGK RIASSPIITVYLHRPSAN
Sequences:
>Translated_178_residues MSYKQLIFLILFSTSAFAGTVYTWEDSDGTRHFSDSPPPTNIKSKQLSLSTSVPLEESYDDTATSVEPVAKKAKSKTPEK KDKKLEISFSNLQQEETIRSSRGHITVLTDLNRKLSIDEKLQLMLDGSPYGLPQASTEWKLTGIDRGTHLITVVATKDGK RIASSPIITVYLHRPSAN >Mature_177_residues SYKQLIFLILFSTSAFAGTVYTWEDSDGTRHFSDSPPPTNIKSKQLSLSTSVPLEESYDDTATSVEPVAKKAKSKTPEKK DKKLEISFSNLQQEETIRSSRGHITVLTDLNRKLSIDEKLQLMLDGSPYGLPQASTEWKLTGIDRGTHLITVVATKDGKR IASSPIITVYLHRPSAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19758; Mature: 19626
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYKQLIFLILFSTSAFAGTVYTWEDSDGTRHFSDSPPPTNIKSKQLSLSTSVPLEESYD CCHHHEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC DTATSVEPVAKKAKSKTPEKKDKKLEISFSNLQQEETIRSSRGHITVLTDLNRKLSIDEK CCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHCCHHHHHHHCCCCEEEEECCCCCCCCCCE LQLMLDGSPYGLPQASTEWKLTGIDRGTHLITVVATKDGKRIASSPIITVYLHRPSAN EEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEECCCCEEEEEEECCCCC >Mature Secondary Structure SYKQLIFLILFSTSAFAGTVYTWEDSDGTRHFSDSPPPTNIKSKQLSLSTSVPLEESYD CHHHEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC DTATSVEPVAKKAKSKTPEKKDKKLEISFSNLQQEETIRSSRGHITVLTDLNRKLSIDEK CCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHCCHHHHHHHCCCCEEEEECCCCCCCCCCE LQLMLDGSPYGLPQASTEWKLTGIDRGTHLITVVATKDGKRIASSPIITVYLHRPSAN EEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCEECCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA