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The map label for this gene is cph2 [H]

Identifier: 59710701

GI number: 59710701

Start: 108298

End: 110856

Strand: Reverse

Name: cph2 [H]

Synonym: VF_0094

Alternate gene names: 59710701

Gene position: 110856-108298 (Counterclockwise)

Preceding gene: 59710702

Following gene: 172087639

Centisome position: 3.83

GC content: 38.69

Gene sequence:

>2559_bases
ATGACAGAACCAACACATAAAAAACAATTTTCCTTACGAACCGCAGTCATGCTTCCGTTTATTGCTGTGTTGTTGGTAAC
GCTAAGTATCGTTTTTTATACTCAAAATAATAGCTACGAAAAGCTAGTTGGTGATGTAAGCGAAAAAGTACTCGCCTCTT
ACACTCAAAATACTCATGCCGATCTTAATATCTTTTTAAACGCCCCTAACTTTGCTGTAAAAAGCATGGTTAATCAAATT
CAGCGCTATCAAATGTATCACCCTAACGATACTAAACAGCTACAACAATTCTTAAAAGATAGCCTTGAAGGCATTTATAC
TGGTCTTGAACAGATGGACGTTCTCTCTTTTGGTGGGGAGAAAAAAGAATACATAGGTTTTCGCCGAGAGCCTAATGCTA
GTTTATCTCTGATGCTTCAAGATAAAAGAACCAATGATGATCTTATTATTTATCGTGGTAGCGAGATGTCTGATAATATT
CGCACAGTCATTGCAAACTATGACCCTCGCTCTCGCCCTTGGTACAAACCTGCCGCGACCACATTTAAACCCTCTTGGTC
TAAAATCTATACTAACGCCGATGAAAAAAAAGAAATCACCATCTCAACCATGCACCCGGTATTCTATGATGAGGACTTTA
TTGGCGTTTTTGCAGCAGATGTAAAACTGGACTCATTTAATAAATTCTTATCTCAAGAAACAAAGCACACCAAAGGCGTT
ATTTACCTAATTGACGATCAACAACGTTTAATCGCTCACTCAAGTGTGGGAAGTGTATTGTCCATCGGTACTCAAAATAG
CCCTGTTGGCTCACGCTTGTTTGCTGTAGAAAGTTGTGATGAGACCATTCAACAAAGCGCGACTTACATTAAGAACAACC
AGCTAATTAATAATAAAAATAATGATGCTGAAGTTTTCTCTTTCTACTACAAAGGCGAGCGCTACTTCAGTCAAATAACC
CCTTATATCGATGGTAATAATTTAAATTGGTACATCGTTATCTCAATATCGGAAAGTGACCTTCTTGGCCACCTTCAAGA
AGAGCAACGCCGTGGTTTATTTTTTGGCATCGTTCTTGCGGCTATTGGGTTAATTGTGGGCGTTTATCTTGTTACACAAG
TGACTAAACCTATTTTTACGACTGCAAATGCAGCACGTAATATCGCAAGTGGTAATTGGAATAATAACGTTGAAGCTCAA
GGCAGCATTTACGAAACAACACTATTAATGAATGCGTTTAATGACATGACCAATAAGCTCCAATCGTCATTTGATGCAAT
GCGCCAGCAAATTACCTTTGACTCCTTAACTCAAGTTCTGAGTCGACAAGGACTGATAGAACAATGCCGAATCATGCTTG
ATAAAAAAGAGCATTATGAGCAAGGATTGTTAGTTATCGGGATTAATAATTTTAGAGATATCAATGACAGCTTTGGTATT
TTAGAGGGCGACCAATTACTCAAAAACATCAGTGACCGCTTACAGTGTAGCTTTGCTCATGACAACATTGCCATTGCTCG
AGTTGGTGGTGATGAATTCGCTCTGTTCTTCTCAAAACTCGATGATGTCGAACAACTAAAACAGTATGCACGAGACATGG
AAGGCTGTTTTATGACTCCATTTAGAGTGGCATCAAACAACTCCCTTTTGAGCATATCAACAGGTTTGGTTTATGGTGAT
TTAAGCTGTGATTCCATGACGCTTTGGTTAAGAAACGCCAGCATCGCTCTAGGCCAAGCGAAAAAGAACAACCTTAATAT
GTCACTGTACACTCCTGAAATGGCAGAGGCTTCATTACATAAAGCAAATATGACCGCTGAACTGTCTTTGGCCATTAAAA
ACAAAGAGCTTGTCCCTTTTTACCAACCAATAATTGATATAAAGAGTGGAAAAACCATCGGTGCGGAAGCATTAATTCGC
TGGTTAAGCCCACAAAGAGGAATGGTTTCACCATTAGATTTTATTCCGTTAGCGGAAGAAAACGGCATGATAATACCTAT
GGGATCTCAAGTGTTAACTCAAGCTTGTTTAGATACCGTTGAGCGTATTGACCAAGGTCTATGGCCTGCTGATTTTCATA
TGCACGTAAATTTATCGGTTTGCCAACTAACCCAAAATAACTTTTTGGATGAACTAAAAGCAGTATTACACAATACAAGT
ATGGCTCCAGAAAATCTAACCCTAGAAATTACGGAATCACGCTTAGTGAATCATGATAATTCGACCATTAATACTATGCA
GAAGATTCGTGATTTAGGTGTGCAAATAGCCATTGATGATTTTGGTACGGGTTATTCATCCCTTGCTTATATTCATAAAC
TGCCATTTGATGTATTAAAAGTCGACCGTTCATTTATCAAAGATTTGACGGCTGAAAATATCGATTCATCTATTGCAGCA
GCCGTATGCAATATGACCCAAGGATTTGATATTACTCTGGTTGCTGAAGGTATTGAGACACAAGAACAAGCTAAATTGTT
GGCTTCACTCAATTATCATCACGCTCAAGGTTTCCTCTACAGTCGCCCTATTCCTTTAGAAGATTGGCCAACAGAATAA

Upstream 100 bases:

>100_bases
ATGGCTGCCGATATATCTATAATAAGCAAATTGAGTTATTTAGATAATATCGGTTGCACCATTTATCTAAAAAAACACAG
AACAACACAGTGTATAGCCA

Downstream 100 bases:

>100_bases
GTTAACATCACAACGCAATCGTTCAGATTGCGTTGTTTTTAACCGATTTGCTACTGACACATTCCACACTTGTCTCTATA
CTCTGCTGTAATATCTACTT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 852; Mature: 851

Protein sequence:

>852_residues
MTEPTHKKQFSLRTAVMLPFIAVLLVTLSIVFYTQNNSYEKLVGDVSEKVLASYTQNTHADLNIFLNAPNFAVKSMVNQI
QRYQMYHPNDTKQLQQFLKDSLEGIYTGLEQMDVLSFGGEKKEYIGFRREPNASLSLMLQDKRTNDDLIIYRGSEMSDNI
RTVIANYDPRSRPWYKPAATTFKPSWSKIYTNADEKKEITISTMHPVFYDEDFIGVFAADVKLDSFNKFLSQETKHTKGV
IYLIDDQQRLIAHSSVGSVLSIGTQNSPVGSRLFAVESCDETIQQSATYIKNNQLINNKNNDAEVFSFYYKGERYFSQIT
PYIDGNNLNWYIVISISESDLLGHLQEEQRRGLFFGIVLAAIGLIVGVYLVTQVTKPIFTTANAARNIASGNWNNNVEAQ
GSIYETTLLMNAFNDMTNKLQSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKEHYEQGLLVIGINNFRDINDSFGI
LEGDQLLKNISDRLQCSFAHDNIAIARVGGDEFALFFSKLDDVEQLKQYARDMEGCFMTPFRVASNNSLLSISTGLVYGD
LSCDSMTLWLRNASIALGQAKKNNLNMSLYTPEMAEASLHKANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIR
WLSPQRGMVSPLDFIPLAEENGMIIPMGSQVLTQACLDTVERIDQGLWPADFHMHVNLSVCQLTQNNFLDELKAVLHNTS
MAPENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDFGTGYSSLAYIHKLPFDVLKVDRSFIKDLTAENIDSSIAA
AVCNMTQGFDITLVAEGIETQEQAKLLASLNYHHAQGFLYSRPIPLEDWPTE

Sequences:

>Translated_852_residues
MTEPTHKKQFSLRTAVMLPFIAVLLVTLSIVFYTQNNSYEKLVGDVSEKVLASYTQNTHADLNIFLNAPNFAVKSMVNQI
QRYQMYHPNDTKQLQQFLKDSLEGIYTGLEQMDVLSFGGEKKEYIGFRREPNASLSLMLQDKRTNDDLIIYRGSEMSDNI
RTVIANYDPRSRPWYKPAATTFKPSWSKIYTNADEKKEITISTMHPVFYDEDFIGVFAADVKLDSFNKFLSQETKHTKGV
IYLIDDQQRLIAHSSVGSVLSIGTQNSPVGSRLFAVESCDETIQQSATYIKNNQLINNKNNDAEVFSFYYKGERYFSQIT
PYIDGNNLNWYIVISISESDLLGHLQEEQRRGLFFGIVLAAIGLIVGVYLVTQVTKPIFTTANAARNIASGNWNNNVEAQ
GSIYETTLLMNAFNDMTNKLQSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKEHYEQGLLVIGINNFRDINDSFGI
LEGDQLLKNISDRLQCSFAHDNIAIARVGGDEFALFFSKLDDVEQLKQYARDMEGCFMTPFRVASNNSLLSISTGLVYGD
LSCDSMTLWLRNASIALGQAKKNNLNMSLYTPEMAEASLHKANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIR
WLSPQRGMVSPLDFIPLAEENGMIIPMGSQVLTQACLDTVERIDQGLWPADFHMHVNLSVCQLTQNNFLDELKAVLHNTS
MAPENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDFGTGYSSLAYIHKLPFDVLKVDRSFIKDLTAENIDSSIAA
AVCNMTQGFDITLVAEGIETQEQAKLLASLNYHHAQGFLYSRPIPLEDWPTE
>Mature_851_residues
TEPTHKKQFSLRTAVMLPFIAVLLVTLSIVFYTQNNSYEKLVGDVSEKVLASYTQNTHADLNIFLNAPNFAVKSMVNQIQ
RYQMYHPNDTKQLQQFLKDSLEGIYTGLEQMDVLSFGGEKKEYIGFRREPNASLSLMLQDKRTNDDLIIYRGSEMSDNIR
TVIANYDPRSRPWYKPAATTFKPSWSKIYTNADEKKEITISTMHPVFYDEDFIGVFAADVKLDSFNKFLSQETKHTKGVI
YLIDDQQRLIAHSSVGSVLSIGTQNSPVGSRLFAVESCDETIQQSATYIKNNQLINNKNNDAEVFSFYYKGERYFSQITP
YIDGNNLNWYIVISISESDLLGHLQEEQRRGLFFGIVLAAIGLIVGVYLVTQVTKPIFTTANAARNIASGNWNNNVEAQG
SIYETTLLMNAFNDMTNKLQSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKEHYEQGLLVIGINNFRDINDSFGIL
EGDQLLKNISDRLQCSFAHDNIAIARVGGDEFALFFSKLDDVEQLKQYARDMEGCFMTPFRVASNNSLLSISTGLVYGDL
SCDSMTLWLRNASIALGQAKKNNLNMSLYTPEMAEASLHKANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIRW
LSPQRGMVSPLDFIPLAEENGMIIPMGSQVLTQACLDTVERIDQGLWPADFHMHVNLSVCQLTQNNFLDELKAVLHNTSM
APENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDFGTGYSSLAYIHKLPFDVLKVDRSFIKDLTAENIDSSIAAA
VCNMTQGFDITLVAEGIETQEQAKLLASLNYHHAQGFLYSRPIPLEDWPTE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=453, Percent_Identity=30.0220750551876, Blast_Score=232, Evalue=8e-62,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=32.4074074074074, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI1787055, Length=738, Percent_Identity=23.0352303523035, Blast_Score=172, Evalue=1e-43,
Organism=Escherichia coli, GI226510982, Length=452, Percent_Identity=25.8849557522124, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=36.6666666666667, Blast_Score=166, Evalue=6e-42,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=31.3432835820896, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=33.3333333333333, Blast_Score=152, Evalue=8e-38,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=34.453781512605, Blast_Score=150, Evalue=5e-37,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=33.0578512396694, Blast_Score=149, Evalue=1e-36,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=33.8842975206612, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI1788849, Length=248, Percent_Identity=30.241935483871, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI87082096, Length=397, Percent_Identity=23.6775818639798, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI1787410, Length=147, Percent_Identity=25.1700680272109, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 95995; Mature: 95864

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPTHKKQFSLRTAVMLPFIAVLLVTLSIVFYTQNNSYEKLVGDVSEKVLASYTQNTHA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
DLNIFLNAPNFAVKSMVNQIQRYQMYHPNDTKQLQQFLKDSLEGIYTGLEQMDVLSFGGE
EEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KKEYIGFRREPNASLSLMLQDKRTNDDLIIYRGSEMSDNIRTVIANYDPRSRPWYKPAAT
CHHHCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
TFKPSWSKIYTNADEKKEITISTMHPVFYDEDFIGVFAADVKLDSFNKFLSQETKHTKGV
CCCCCHHHHCCCCCCCCEEEEEEECCCEECCCCCEEEEEEEEHHHHHHHHHHHCCCCCCE
IYLIDDQQRLIAHSSVGSVLSIGTQNSPVGSRLFAVESCDETIQQSATYIKNNQLINNKN
EEEECCCHHHHHHHCCCCCEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEECCCC
NDAEVFSFYYKGERYFSQITPYIDGNNLNWYIVISISESDLLGHLQEEQRRGLFFGIVLA
CCCEEEEEEECCHHHHHHCCCCEECCCEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHH
AIGLIVGVYLVTQVTKPIFTTANAARNIASGNWNNNVEAQGSIYETTLLMNAFNDMTNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKEHYEQGLLVIGINNFRDINDSFGI
HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCEEEEEECCCCCCCCCCCC
LEGDQLLKNISDRLQCSFAHDNIAIARVGGDEFALFFSKLDDVEQLKQYARDMEGCFMTP
CCHHHHHHHHHHHHEEEEECCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
FRVASNNSLLSISTGLVYGDLSCDSMTLWLRNASIALGQAKKNNLNMSLYTPEMAEASLH
EEEECCCCEEEEECCEEEECCCCCCEEEEEECCCEEECCCCCCCCEEEEECCHHHHHHHH
KANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIRWLSPQRGMVSPLDFIPLAEE
HCCCEEEEEEEEECCCCCCHHHHHEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCC
NGMIIPMGSQVLTQACLDTVERIDQGLWPADFHMHVNLSVCQLTQNNFLDELKAVLHNTS
CCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHCCC
MAPENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDFGTGYSSLAYIHKLPFDVLK
CCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHHH
VDRSFIKDLTAENIDSSIAAAVCNMTQGFDITLVAEGIETQEQAKLLASLNYHHAQGFLY
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHCCEEE
SRPIPLEDWPTE
CCCCCCCCCCCC
>Mature Secondary Structure 
TEPTHKKQFSLRTAVMLPFIAVLLVTLSIVFYTQNNSYEKLVGDVSEKVLASYTQNTHA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCC
DLNIFLNAPNFAVKSMVNQIQRYQMYHPNDTKQLQQFLKDSLEGIYTGLEQMDVLSFGGE
EEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KKEYIGFRREPNASLSLMLQDKRTNDDLIIYRGSEMSDNIRTVIANYDPRSRPWYKPAAT
CHHHCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
TFKPSWSKIYTNADEKKEITISTMHPVFYDEDFIGVFAADVKLDSFNKFLSQETKHTKGV
CCCCCHHHHCCCCCCCCEEEEEEECCCEECCCCCEEEEEEEEHHHHHHHHHHHCCCCCCE
IYLIDDQQRLIAHSSVGSVLSIGTQNSPVGSRLFAVESCDETIQQSATYIKNNQLINNKN
EEEECCCHHHHHHHCCCCCEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCEECCCC
NDAEVFSFYYKGERYFSQITPYIDGNNLNWYIVISISESDLLGHLQEEQRRGLFFGIVLA
CCCEEEEEEECCHHHHHHCCCCEECCCEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHH
AIGLIVGVYLVTQVTKPIFTTANAARNIASGNWNNNVEAQGSIYETTLLMNAFNDMTNKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QSSFDAMRQQITFDSLTQVLSRQGLIEQCRIMLDKKEHYEQGLLVIGINNFRDINDSFGI
HHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCEEEEEECCCCCCCCCCCC
LEGDQLLKNISDRLQCSFAHDNIAIARVGGDEFALFFSKLDDVEQLKQYARDMEGCFMTP
CCHHHHHHHHHHHHEEEEECCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
FRVASNNSLLSISTGLVYGDLSCDSMTLWLRNASIALGQAKKNNLNMSLYTPEMAEASLH
EEEECCCCEEEEECCEEEECCCCCCEEEEEECCCEEECCCCCCCCEEEEECCHHHHHHHH
KANMTAELSLAIKNKELVPFYQPIIDIKSGKTIGAEALIRWLSPQRGMVSPLDFIPLAEE
HCCCEEEEEEEEECCCCCCHHHHHEECCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCC
NGMIIPMGSQVLTQACLDTVERIDQGLWPADFHMHVNLSVCQLTQNNFLDELKAVLHNTS
CCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEHHHHHHHHHHHHHHCCC
MAPENLTLEITESRLVNHDNSTINTMQKIRDLGVQIAIDDFGTGYSSLAYIHKLPFDVLK
CCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHHH
VDRSFIKDLTAENIDSSIAAAVCNMTQGFDITLVAEGIETQEQAKLLASLNYHHAQGFLY
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHCCEEE
SRPIPLEDWPTE
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]