Click here to switch to the map view.

The map label for this gene is petC [H]

Identifier: 58617243

GI number: 58617243

Start: 830029

End: 830787

Strand: Reverse

Name: petC [H]

Synonym: ERGA_CDS_05160

Alternate gene names: 58617243

Gene position: 830787-830029 (Counterclockwise)

Preceding gene: 58617244

Following gene: 58617242

Centisome position: 55.39

GC content: 33.2

Gene sequence:

>759_bases
ATGTTACTGCGTTTTATACTCATAATATTTTCTTTATATATTTCACCTGCTTATGCTACAGATGAATTTCATCCTGCATC
TCCTAAGAACATTAATTGGAAGTTTAGTGGTGTATTTGGTTCATTTGATAAACCATCTATTCAACGTGGTTACCAAGTTT
ATAAAGAAGTTTGTTCATCTTGTCATTCTATGAAAAGGATAGCTTTTCGTAATTTACGTGATGTTGGGTTTTCAGAGGAT
GAAGTGAAAACTATTGCTAAATCATATAACGTTATAGACGGACCAAATGAATCTGGTGAGATGTTTGAACGTCCAGGTAT
TCCATCGGATTATTTTGTCTCTCCTTTCCCTAATAAGGAGGCTGCTGTAGCTGCTAATGGTGGTGCTTTTCCTGTTGATC
TGTCCTTAATAATTAAGGCAAGACATAATGGTGCTAATTATGTATATTCATTATTAGTTGGATATGAAAGTAATACTGCT
GATGAAAGTGGCTTATATAGTAATCCTTATTTTGCTACTGGAAAAATATCTATGCCTCCACCTCTCTCTGATCATTTAGT
GCAGTATATAGATGGCACAGATTCTACATTGCAGAATATGGCATATGATGTAGTTAATTTTCTGCAATGGGCTGCTGAAC
CTGAAATGGAAGCACGTAAGAAACTTGGGATTAAAGTTATTACATTTTTATTAGTGATTACTATTTTTGTATTTTTTGTA
AATAAAAGGCTATGGAAATCGCTTTATAAAGATAAATAG

Upstream 100 bases:

>100_bases
ATTTTTCCTATTTTGTTATTATCTTACCTATATTGTCTAAATATGAGAAATCAGTTGTCCTTCCAAATACACTAAGTGAT
ACAGTTTCGGAGATGAAATA

Downstream 100 bases:

>100_bases
GATTATATTTATATGTTTTCTACTTCAGTATTTTTCTTATTAATTTTTATTAATATTGTATATAGCTGTGTTGATTTAAG
TGATATTCTAATAATGTATT

Product: cytochrome c1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLLRFILIIFSLYISPAYATDEFHPASPKNINWKFSGVFGSFDKPSIQRGYQVYKEVCSSCHSMKRIAFRNLRDVGFSED
EVKTIAKSYNVIDGPNESGEMFERPGIPSDYFVSPFPNKEAAVAANGGAFPVDLSLIIKARHNGANYVYSLLVGYESNTA
DESGLYSNPYFATGKISMPPPLSDHLVQYIDGTDSTLQNMAYDVVNFLQWAAEPEMEARKKLGIKVITFLLVITIFVFFV
NKRLWKSLYKDK

Sequences:

>Translated_252_residues
MLLRFILIIFSLYISPAYATDEFHPASPKNINWKFSGVFGSFDKPSIQRGYQVYKEVCSSCHSMKRIAFRNLRDVGFSED
EVKTIAKSYNVIDGPNESGEMFERPGIPSDYFVSPFPNKEAAVAANGGAFPVDLSLIIKARHNGANYVYSLLVGYESNTA
DESGLYSNPYFATGKISMPPPLSDHLVQYIDGTDSTLQNMAYDVVNFLQWAAEPEMEARKKLGIKVITFLLVITIFVFFV
NKRLWKSLYKDK
>Mature_252_residues
MLLRFILIIFSLYISPAYATDEFHPASPKNINWKFSGVFGSFDKPSIQRGYQVYKEVCSSCHSMKRIAFRNLRDVGFSED
EVKTIAKSYNVIDGPNESGEMFERPGIPSDYFVSPFPNKEAAVAANGGAFPVDLSLIIKARHNGANYVYSLLVGYESNTA
DESGLYSNPYFATGKISMPPPLSDHLVQYIDGTDSTLQNMAYDVVNFLQWAAEPEMEARKKLGIKVITFLLVITIFVFFV
NKRLWKSLYKDK

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG2857

COG function: function code C; Cytochrome c1

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI21359867, Length=234, Percent_Identity=46.1538461538462, Blast_Score=214, Evalue=7e-56,
Organism=Caenorhabditis elegans, GI17506225, Length=241, Percent_Identity=39.4190871369295, Blast_Score=154, Evalue=6e-38,
Organism=Saccharomyces cerevisiae, GI6324639, Length=224, Percent_Identity=45.5357142857143, Blast_Score=209, Evalue=4e-55,
Organism=Drosophila melanogaster, GI24658292, Length=248, Percent_Identity=45.1612903225806, Blast_Score=210, Evalue=6e-55,
Organism=Drosophila melanogaster, GI21358225, Length=253, Percent_Identity=43.0830039525692, Blast_Score=191, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002326
- InterPro:   IPR021157
- InterPro:   IPR009056 [H]

Pfam domain/function: PF02167 Cytochrom_C1 [H]

EC number: NA

Molecular weight: Translated: 28425; Mature: 28425

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRFILIIFSLYISPAYATDEFHPASPKNINWKFSGVFGSFDKPSIQRGYQVYKEVCSS
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
CHSMKRIAFRNLRDVGFSEDEVKTIAKSYNVIDGPNESGEMFERPGIPSDYFVSPFPNKE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
AAVAANGGAFPVDLSLIIKARHNGANYVYSLLVGYESNTADESGLYSNPYFATGKISMPP
CEEEECCCCCCEEHEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCC
PLSDHLVQYIDGTDSTLQNMAYDVVNFLQWAAEPEMEARKKLGIKVITFLLVITIFVFFV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NKRLWKSLYKDK
HHHHHHHHHCCC
>Mature Secondary Structure
MLLRFILIIFSLYISPAYATDEFHPASPKNINWKFSGVFGSFDKPSIQRGYQVYKEVCSS
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
CHSMKRIAFRNLRDVGFSEDEVKTIAKSYNVIDGPNESGEMFERPGIPSDYFVSPFPNKE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
AAVAANGGAFPVDLSLIIKARHNGANYVYSLLVGYESNTADESGLYSNPYFATGKISMPP
CEEEECCCCCCEEHEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCC
PLSDHLVQYIDGTDSTLQNMAYDVVNFLQWAAEPEMEARKKLGIKVITFLLVITIFVFFV
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NKRLWKSLYKDK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2176269 [H]