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The map label for this gene is psd

Identifier: 58617044

GI number: 58617044

Start: 522361

End: 523044

Strand: Reverse

Name: psd

Synonym: ERGA_CDS_03170

Alternate gene names: 58617044

Gene position: 523044-522361 (Counterclockwise)

Preceding gene: 58617045

Following gene: 58617043

Centisome position: 34.87

GC content: 31.58

Gene sequence:

>684_bases
ATGCTTTGTAATTTAATTCACAACATCCATAAAGAAGGGTATATCATCATAATGATATCCTTTCTTTTATCTTGTATAGG
TTTCGCAATCTCTTGCAGCTTAGGTATAATCTTTCTAGTCGCATCATTACTATGTATATATTTCTTCCGTGATCCTATAC
GTATCGTTCCTGAAGGGGATCATTTAATTATCAGTCCAGCTGACGGTATAATACTAAACATTGAACAAGTCAATTCACCA
ATAGATAATTCTACACAGGTATTATGCATTAGTATCTTCTTAAATGTACTAAATGTTCATGTAAATCGAATTCCTGTATC
TGGTACTATCAAAGCTACAGAATATATACCAGGAAGATTTATTTCAGCTTCACTTAATAAGTCAAGTGAGTTAAATGAAA
GGCAAAGAATAGTAATAGAATCCAATGTCAGTCATCACACAATAATTGTAGATCAAATAGCTGGATTAATAGCACGAAGA
ATAGTATGCAATGCTTATGAAGGTCAGAATGTTAATTCTGGAGAAAGATTTGGTATTATCAGGTTTGGAAGTCGAGTCAA
TATATATTTGCCATTAAATATCCACATATCAGCTTTCAAAGGACAAACAGTAATAGGTGGAGAAACTATTCTTGCATATC
TAGAAGATTACCCTCATAAACAATTAACAGCAAAATTTATATAA

Upstream 100 bases:

>100_bases
GTTATCACTTATCTATATGATTCTATAGTACCTTATCAAATAGTAATTGCATAAAATATTGCAATGTATATAATTTTTGA
AAAAGGCCTGAGGTTAAATA

Downstream 100 bases:

>100_bases
ATATGAAAGAAGAACAAAGTGGTAAGTTTTTCCCTATTGCAAGATTGTTTCCAAATTTAATTACCTTGTTGGGGTTATGT
GCTGGCTTAACTTCTATAAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLCNLIHNIHKEGYIIIMISFLLSCIGFAISCSLGIIFLVASLLCIYFFRDPIRIVPEGDHLIISPADGIILNIEQVNSP
IDNSTQVLCISIFLNVLNVHVNRIPVSGTIKATEYIPGRFISASLNKSSELNERQRIVIESNVSHHTIIVDQIAGLIARR
IVCNAYEGQNVNSGERFGIIRFGSRVNIYLPLNIHISAFKGQTVIGGETILAYLEDYPHKQLTAKFI

Sequences:

>Translated_227_residues
MLCNLIHNIHKEGYIIIMISFLLSCIGFAISCSLGIIFLVASLLCIYFFRDPIRIVPEGDHLIISPADGIILNIEQVNSP
IDNSTQVLCISIFLNVLNVHVNRIPVSGTIKATEYIPGRFISASLNKSSELNERQRIVIESNVSHHTIIVDQIAGLIARR
IVCNAYEGQNVNSGERFGIIRFGSRVNIYLPLNIHISAFKGQTVIGGETILAYLEDYPHKQLTAKFI
>Mature_227_residues
MLCNLIHNIHKEGYIIIMISFLLSCIGFAISCSLGIIFLVASLLCIYFFRDPIRIVPEGDHLIISPADGIILNIEQVNSP
IDNSTQVLCISIFLNVLNVHVNRIPVSGTIKATEYIPGRFISASLNKSSELNERQRIVIESNVSHHTIIVDQIAGLIARR
IVCNAYEGQNVNSGERFGIIRFGSRVNIYLPLNIHISAFKGQTVIGGETILAYLEDYPHKQLTAKFI

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_EHRRG (Q5FHJ9)

Other databases:

- EMBL:   CR925677
- RefSeq:   YP_196243.1
- STRING:   Q5FHJ9
- GeneID:   3268196
- GenomeReviews:   CR925677_GR
- KEGG:   erg:ERGA_CDS_03170
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   ERUM302409:ERGA_CDS_03170-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 25245; Mature: 25245

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCNLIHNIHKEGYIIIMISFLLSCIGFAISCSLGIIFLVASLLCIYFFRDPIRIVPEGD
CCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
HLIISPADGIILNIEQVNSPIDNSTQVLCISIFLNVLNVHVNRIPVSGTIKATEYIPGRF
EEEEECCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCEE
ISASLNKSSELNERQRIVIESNVSHHTIIVDQIAGLIARRIVCNAYEGQNVNSGERFGII
EEECCCCCCCCCCHHEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
RFGSRVNIYLPLNIHISAFKGQTVIGGETILAYLEDYPHKQLTAKFI
EECCEEEEEEEEEEEEEEECCCEEECHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MLCNLIHNIHKEGYIIIMISFLLSCIGFAISCSLGIIFLVASLLCIYFFRDPIRIVPEGD
CCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
HLIISPADGIILNIEQVNSPIDNSTQVLCISIFLNVLNVHVNRIPVSGTIKATEYIPGRF
EEEEECCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCEE
ISASLNKSSELNERQRIVIESNVSHHTIIVDQIAGLIARRIVCNAYEGQNVNSGERFGII
EEECCCCCCCCCCHHEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
RFGSRVNIYLPLNIHISAFKGQTVIGGETILAYLEDYPHKQLTAKFI
EECCEEEEEEEEEEEEEEECCCEEECHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA