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The map label for this gene is dapF [H]

Identifier: 58616748

GI number: 58616748

Start: 23282

End: 24079

Strand: Reverse

Name: dapF [H]

Synonym: ERGA_CDS_00210

Alternate gene names: 58616748

Gene position: 24079-23282 (Counterclockwise)

Preceding gene: 58616749

Following gene: 58616747

Centisome position: 1.61

GC content: 33.08

Gene sequence:

>798_bases
GTGATAAACTTCATAAAAATGCATGGGACTCTAAATGACTTTGTCATCATCGACTGTAGAGAGAAAATGTATCACAATAT
TAATTTCAAGAAAATTGCACATAGAAAAACAGGTATTGGTTGTGATCAAGTAATTGTGATTACATCATCAAAAAAAGCTG
ACTGCTTTATACATATATACAATCCAGATGGTAGCAAGGTTGAAATGTGTGGAAATGCTGCAAGATGTGTTGCTTATCTA
TTAAGTAATGAAAAAAAAAATGATAATATCACAATTGAACTATCAGATCGAATACTATCATGCGTTAGAACATCACATGA
TAAAATACAGGTTAATATGGGATATCCAAAATTTCACTGGAAAGATATTCCTGTACTCCACGCATGCGATACTCTATACT
TACCCATAAAAACAGAGCTTCTTAGTTATCCTGTAGGAGTAAATATAGGTAATCCTCATGCTGTATTCTTTGTTGATTCA
ATCGATGATATTCCATTGACTAAAATAGGACCAGAACTAGAAAATCATACTTTATTTCCGAACAAAGCAAACATCAGCAT
TGCACAAGTTATTTCCAGGAATGAAATCAAGCTTAGAGTATGGGAACGTGGTACAGGAGAAACAGCATCATGTGGTAGCG
CTGCATGCGCAACATTAGTCGCAGCAGTAAGACGTAATTACACTAACCATCATGCTACTATTTATTTACAAGGCGGTAAT
CTATTAATATTATATAAAGATGATAATACTATTTTAATGGAAGGAGTAGTATCATATGTATTTAGTGGTGTTATTTAG

Upstream 100 bases:

>100_bases
AAAAAAAAAAATTTATATTTAATATGCATTAAATAATAAATATTTGAAAATGTTTTAGAATGTATCACAATAATTATAGG
CTATTTTTTTATTTTCACAC

Downstream 100 bases:

>100_bases
GTAATTTTACTTTAACACTTTTCTAGTCAATGCACTTTTATGCAATGTATAGTTATGTTACAATAATTTATAATTACAGA
TGAGTTCTTATGAAATTGAA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGCDQVIVITSSKKADCFIHIYNPDGSKVEMCGNAARCVAYL
LSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPKFHWKDIPVLHACDTLYLPIKTELLSYPVGVNIGNPHAVFFVDS
IDDIPLTKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNHHATIYLQGGN
LLILYKDDNTILMEGVVSYVFSGVI

Sequences:

>Translated_265_residues
MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGCDQVIVITSSKKADCFIHIYNPDGSKVEMCGNAARCVAYL
LSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPKFHWKDIPVLHACDTLYLPIKTELLSYPVGVNIGNPHAVFFVDS
IDDIPLTKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNHHATIYLQGGN
LLILYKDDNTILMEGVVSYVFSGVI
>Mature_265_residues
MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGCDQVIVITSSKKADCFIHIYNPDGSKVEMCGNAARCVAYL
LSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPKFHWKDIPVLHACDTLYLPIKTELLSYPVGVNIGNPHAVFFVDS
IDDIPLTKIGPELENHTLFPNKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNHHATIYLQGGN
LLILYKDDNTILMEGVVSYVFSGVI

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=275, Percent_Identity=34.1818181818182, Blast_Score=165, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 29656; Mature: 29656

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGCDQVIVITSSKKADCFIHIY
CCEEEEECCCCCCEEEEEECHHHHCCCCHHHEECCCCCCCCCEEEEEECCCCCEEEEEEE
NPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPKFHW
CCCCCEEEECCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCEEEEEECCCCCCC
KDIPVLHACDTLYLPIKTELLSYPVGVNIGNPHAVFFVDSIDDIPLTKIGPELENHTLFP
CCCCEEEECCEEEEEEEHHHHCCCCEEECCCCEEEEEEECCCCCCCHHCCCCCCCCEECC
NKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNHHATIYLQGGN
CCCCEEHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
LLILYKDDNTILMEGVVSYVFSGVI
EEEEEECCCEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MINFIKMHGTLNDFVIIDCREKMYHNINFKKIAHRKTGIGCDQVIVITSSKKADCFIHIY
CCEEEEECCCCCCEEEEEECHHHHCCCCHHHEECCCCCCCCCEEEEEECCCCCEEEEEEE
NPDGSKVEMCGNAARCVAYLLSNEKKNDNITIELSDRILSCVRTSHDKIQVNMGYPKFHW
CCCCCEEEECCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHCCCCEEEEEECCCCCCC
KDIPVLHACDTLYLPIKTELLSYPVGVNIGNPHAVFFVDSIDDIPLTKIGPELENHTLFP
CCCCEEEECCEEEEEEEHHHHCCCCEEECCCCEEEEEEECCCCCCCHHCCCCCCCCEECC
NKANISIAQVISRNEIKLRVWERGTGETASCGSAACATLVAAVRRNYTNHHATIYLQGGN
CCCCEEHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
LLILYKDDNTILMEGVVSYVFSGVI
EEEEEECCCEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA