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The map label for this gene is lytR [H]

Identifier: 56965575

GI number: 56965575

Start: 3977613

End: 3978536

Strand: Direct

Name: lytR [H]

Synonym: ABC3817

Alternate gene names: 56965575

Gene position: 3977613-3978536 (Clockwise)

Preceding gene: 56965571

Following gene: 56965576

Centisome position: 92.42

GC content: 48.38

Gene sequence:

>924_bases
ATGAAAAAGAAAACCGTTTTAAAAGTCATTGCCCTTCTTTTCGGGCTCCTGTTTCTGAGCGTGATTGGTTACGGTATCTA
TTTGTACAACGATATTCGCCATACAGCCAATGAAATGTATGACCCTCTTCCAAACCGCGAAGGCGCTTCTCCGCTTCGCC
CCGCTAGCCTTCAAGTCGGAGAACCAATGTCGATTCTTCTCACTGGGGTGGATTTAACGGAAGGCCGCGAAGACGAAGTT
GTTGGCCGAGCCGACTCGATTATGGTACTAACGTTAAACCCGGCAGAAGGGACAACGAAAATGCTTAGCATTCCCCGTGA
TACCCGAGCAGAGATTGTTGGCCGCGGCACGGTGGAAAAAATCAACCATGCCCATGCATATGGCGGCGCACAAATGCTGA
TTGATTCGATTGAAGAAGCGTATGGCATACCAATTGACCATTACGCTAGTATCAATATGGCTGGATTTGAACGTTTAATT
GATGCTTTTGGTGGCGTCACGGTTTACAATGATTTTGAGTTTGAGATGGATGGTTCTCACTTCCCAGAAGGAACGATTGA
GTTAAACGGGGAAGAGGCGCTCAAGTACACACGTATGCGCTATGACGACCCTCGCGGTGATGCCGGACGAGCAAACCGAC
AACGAGACATTATTGATGCGCTCATGCAAGAGTCCGCCTCTCTCGGCTCGATTACAAAAGTCGGCGAGATTCTAGATGTG
CTCGGCACCACTGTCCGGACAGATTTATCATTAGATGTCATGTGGGACTACCAGTCTGAATATCGCCCTGCTCTCGGTTC
AACCGAACAAATCGAAGTTTCCTATACAGGGGAAACGATTGACGGCATATGGTACGCCATTGTCAGCGACGAAGAAAAAG
CCCGCGTGCGAAATGAAATGCTGTCACATTTGGGACTCGAATAA

Upstream 100 bases:

>100_bases
ACAAAAAGATAGGCTTGTGGAATGGTAGTAAATTAATTATCCTATTAAGAAAGTAGTTGCCTAATTCCATATCTTCAATT
AGAAAGGCGTTATTCTTATT

Downstream 100 bases:

>100_bases
GTCGATTCCTTTATAGAAGGAGGGGATGGAATGCATTCATTAGCAAAAAAAGCATTCTCTTTACTAGCAGCTGGCAAGCT
GGAAGCTTCGCAAGAAACAT

Product: attenuator role for lytABC and lytR expression

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MKKKTVLKVIALLFGLLFLSVIGYGIYLYNDIRHTANEMYDPLPNREGASPLRPASLQVGEPMSILLTGVDLTEGREDEV
VGRADSIMVLTLNPAEGTTKMLSIPRDTRAEIVGRGTVEKINHAHAYGGAQMLIDSIEEAYGIPIDHYASINMAGFERLI
DAFGGVTVYNDFEFEMDGSHFPEGTIELNGEEALKYTRMRYDDPRGDAGRANRQRDIIDALMQESASLGSITKVGEILDV
LGTTVRTDLSLDVMWDYQSEYRPALGSTEQIEVSYTGETIDGIWYAIVSDEEKARVRNEMLSHLGLE

Sequences:

>Translated_307_residues
MKKKTVLKVIALLFGLLFLSVIGYGIYLYNDIRHTANEMYDPLPNREGASPLRPASLQVGEPMSILLTGVDLTEGREDEV
VGRADSIMVLTLNPAEGTTKMLSIPRDTRAEIVGRGTVEKINHAHAYGGAQMLIDSIEEAYGIPIDHYASINMAGFERLI
DAFGGVTVYNDFEFEMDGSHFPEGTIELNGEEALKYTRMRYDDPRGDAGRANRQRDIIDALMQESASLGSITKVGEILDV
LGTTVRTDLSLDVMWDYQSEYRPALGSTEQIEVSYTGETIDGIWYAIVSDEEKARVRNEMLSHLGLE
>Mature_307_residues
MKKKTVLKVIALLFGLLFLSVIGYGIYLYNDIRHTANEMYDPLPNREGASPLRPASLQVGEPMSILLTGVDLTEGREDEV
VGRADSIMVLTLNPAEGTTKMLSIPRDTRAEIVGRGTVEKINHAHAYGGAQMLIDSIEEAYGIPIDHYASINMAGFERLI
DAFGGVTVYNDFEFEMDGSHFPEGTIELNGEEALKYTRMRYDDPRGDAGRANRQRDIIDALMQESASLGSITKVGEILDV
LGTTVRTDLSLDVMWDYQSEYRPALGSTEQIEVSYTGETIDGIWYAIVSDEEKARVRNEMLSHLGLE

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 34050; Mature: 34050

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTVLKVIALLFGLLFLSVIGYGIYLYNDIRHTANEMYDPLPNREGASPLRPASLQVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EPMSILLTGVDLTEGREDEVVGRADSIMVLTLNPAEGTTKMLSIPRDTRAEIVGRGTVEK
CCCEEEEECCCCCCCCCCHHCCCCCCEEEEEECCCCCCHHEEECCCCHHHHHHCCCCHHH
INHAHAYGGAQMLIDSIEEAYGIPIDHYASINMAGFERLIDAFGGVTVYNDFEFEMDGSH
HHHHHHCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCEEEEECEEEEECCCC
FPEGTIELNGEEALKYTRMRYDDPRGDAGRANRQRDIIDALMQESASLGSITKVGEILDV
CCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LGTTVRTDLSLDVMWDYQSEYRPALGSTEQIEVSYTGETIDGIWYAIVSDEEKARVRNEM
HHHHHHCCCEEEEEECCCHHCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHH
LSHLGLE
HHHCCCC
>Mature Secondary Structure
MKKKTVLKVIALLFGLLFLSVIGYGIYLYNDIRHTANEMYDPLPNREGASPLRPASLQVG
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EPMSILLTGVDLTEGREDEVVGRADSIMVLTLNPAEGTTKMLSIPRDTRAEIVGRGTVEK
CCCEEEEECCCCCCCCCCHHCCCCCCEEEEEECCCCCCHHEEECCCCHHHHHHCCCCHHH
INHAHAYGGAQMLIDSIEEAYGIPIDHYASINMAGFERLIDAFGGVTVYNDFEFEMDGSH
HHHHHHCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCEEEEECEEEEECCCC
FPEGTIELNGEEALKYTRMRYDDPRGDAGRANRQRDIIDALMQESASLGSITKVGEILDV
CCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LGTTVRTDLSLDVMWDYQSEYRPALGSTEQIEVSYTGETIDGIWYAIVSDEEKARVRNEM
HHHHHHCCCEEEEEECCCHHCCCCCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHH
LSHLGLE
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]