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The map label for this gene is erfK [C]

Identifier: 56965297

GI number: 56965297

Start: 3678984

End: 3679481

Strand: Direct

Name: erfK [C]

Synonym: ABC3535

Alternate gene names: 56965297

Gene position: 3678984-3679481 (Clockwise)

Preceding gene: 56965292

Following gene: 56965298

Centisome position: 85.48

GC content: 47.39

Gene sequence:

>498_bases
ATGTTTTTTCATAGCGTCCAGCAAGGCGAAACGTTATCGTCCATTGCCGCTGACTATCGAATTTCTTTGTCCCATCTTAT
TCAAGCCAATCCAACGATCAACCCGAATCAACTATTCGTTGGCCAATCGATTGTCATCCCTGGCCTTCCGAATCCAAACA
CGATCCCGTATGAAATTCATGTCTCCCTTTCCCAGCATCAGTTGACTTTGCTCCACAATGGCTCTGTCGTAAAAATCTAT
CCCATTGCGGTCGGAAAAATGCTGACGCAAACACCAACCGGAAATTTTGTCATCGTCAACAAAGCGCCCAACCCAGGAGG
TCCATTTGGAACAATGTGGATGTCACTTTCCAAACTGCATTATGGCATCCATGGCACAAATGATCCTTCCTCAATCGGCA
AGTCTGTCTCCCATGGCTGCATTCGCATGCACAATAAAGATGTCGAAGAACTCGCCGCCACTGTCCCGATCGGAACGAGA
GTGCGAATTGAACCGTAG

Upstream 100 bases:

>100_bases
AACGTGATCCTTTCCATAACCAAACAAGGGCATGCAAGAGGACAGGATCGAATGCGTACACTCATAGAGAAGCAACATAA
AACCGACTGGAGGATAAGCA

Downstream 100 bases:

>100_bases
GCATTCAGCACCGCTGGCCTTGCTACAACGAGCCACTTCCTTTTATGATGAACAAAGAAAGTCAAATCGTGACAAGGAGT
ACCCAATGGACAGCTTAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Spore protein YkuD homolog

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MFFHSVQQGETLSSIAADYRISLSHLIQANPTINPNQLFVGQSIVIPGLPNPNTIPYEIHVSLSQHQLTLLHNGSVVKIY
PIAVGKMLTQTPTGNFVIVNKAPNPGGPFGTMWMSLSKLHYGIHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVPIGTR
VRIEP

Sequences:

>Translated_165_residues
MFFHSVQQGETLSSIAADYRISLSHLIQANPTINPNQLFVGQSIVIPGLPNPNTIPYEIHVSLSQHQLTLLHNGSVVKIY
PIAVGKMLTQTPTGNFVIVNKAPNPGGPFGTMWMSLSKLHYGIHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVPIGTR
VRIEP
>Mature_165_residues
MFFHSVQQGETLSSIAADYRISLSHLIQANPTINPNQLFVGQSIVIPGLPNPNTIPYEIHVSLSQHQLTLLHNGSVVKIY
PIAVGKMLTQTPTGNFVIVNKAPNPGGPFGTMWMSLSKLHYGIHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVPIGTR
VRIEP

Specific function: Probable enzyme that may play an important role in cell wall biology

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat

Homologues:

Organism=Escherichia coli, GI1788299, Length=182, Percent_Identity=30.2197802197802, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787040, Length=191, Percent_Identity=28.2722513089005, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787968, Length=192, Percent_Identity=29.6875, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787356, Length=195, Percent_Identity=29.2307692307692, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKUD_BACSK (Q5WC42)

Other databases:

- EMBL:   AP006627
- RefSeq:   YP_177029.1
- ProteinModelPortal:   Q5WC42
- SMR:   Q5WC42
- STRING:   Q5WC42
- EnsemblBacteria:   EBBACT00000049226
- GeneID:   3202575
- GenomeReviews:   AP006627_GR
- KEGG:   bcl:ABC3535
- NMPDR:   fig|66692.3.peg.3477
- eggNOG:   COG1376
- GeneTree:   EBGT00070000032370
- HOGENOM:   HBG295778
- OMA:   YKTYKVA
- ProtClustDB:   CLSK887215
- BioCyc:   BCLA66692:ABC3535-MONOMER
- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490
- SMART:   SM00257

Pfam domain/function: PF01476 LysM; PF03734 YkuD

EC number: NA

Molecular weight: Translated: 17896; Mature: 17896

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFHSVQQGETLSSIAADYRISLSHLIQANPTINPNQLFVGQSIVIPGLPNPNTIPYEIH
CCCCCCCCCCHHHHHHHHHEEEEEHHEECCCCCCCCEEEECCEEEECCCCCCCCCCEEEE
VSLSQHQLTLLHNGSVVKIYPIAVGKMLTQTPTGNFVIVNKAPNPGGPFGTMWMSLSKLH
EEECCEEEEEEECCCEEEEEEEEECHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHE
YGIHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVPIGTRVRIEP
ECCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MFFHSVQQGETLSSIAADYRISLSHLIQANPTINPNQLFVGQSIVIPGLPNPNTIPYEIH
CCCCCCCCCCHHHHHHHHHEEEEEHHEECCCCCCCCEEEECCEEEECCCCCCCCCCEEEE
VSLSQHQLTLLHNGSVVKIYPIAVGKMLTQTPTGNFVIVNKAPNPGGPFGTMWMSLSKLH
EEECCEEEEEEECCCEEEEEEEEECHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHE
YGIHGTNDPSSIGKSVSHGCIRMHNKDVEELAATVPIGTRVRIEP
ECCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA