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The map label for this gene is ydeC [H]

Identifier: 56965049

GI number: 56965049

Start: 3412173

End: 3413099

Strand: Direct

Name: ydeC [H]

Synonym: ABC3285

Alternate gene names: 56965049

Gene position: 3412173-3413099 (Clockwise)

Preceding gene: 56965042

Following gene: 56965050

Centisome position: 79.28

GC content: 43.8

Gene sequence:

>927_bases
ATGTTCACGCAATTAGATGCTTACAAAGAACAATTGCCAAGTGGAAATGACATTCGGGAGCCGATCCACTGCCATATGCA
AACAAGCGAACCAAACCGACGGATTGCTAGTCCCCATTTCCATGACGCGATTGAACTGCTCTATTCGTTTTCAGGGCGCG
CCCGTGTTTTCGTGAGCGGGCAACCGTTCCTGATGGAGAAAGGCGACTTAGTGATAATCAACTCTAACGAAGTCCATGCA
ATATGGGGAGAGAGCGGCGAAAAGGTCGAGTACCTTGTAATTAAATTGGATCCCGAAGTCTTGTATTCTACATCTCGCTC
CATTTTTGAATCTAAGTACGTGTTTCCTTTTACGATGTCAAAGTCTAGCCCACAAACACTGCTAAAAAGCGGGGAGATGG
CGAGCACTGTCATTCCAGCAACGATTGCAAAAATCAATGACGAATTTTCACACAAAGATTACGGCTATGACTTTGCGATC
CGGATTCACATCTGCACGATTTTTTTAGCGGTTTTACGCCATTGGCGCCAATCAGGCATTTCTGTTGGGACGGAATCGAT
CAATGATAGCGATTTTCAGCTCATGCGGCAAGTGTTCCAGTTGTTAGAAAGCCACTACGCTACAGCGTTGACAGCAAAAC
AAGCAGCAGCTACTTGCAATTTAAGCTACAGCTATTTTTCTCGAAAAATCAAAAGCATTACCGGGCGTTCGTTCACTGAA
TTGCTAAACTACATTCGCATTACAGAAGCGGAGAAGCTGTTAACGACGACCGATTTAAGCATTACAGAGGTAGCGGTAAG
CGTCGGCTATTCGAGCACAAGCTATTTTATCCAGCATTTTAAACAAGCTAAGCATCTCTCACCTTTACGCTTTAAAAAAC
GTCTCCAACAAAGCGTGTTTGATAAAAATGAAACTTTTTTGTCTTGA

Upstream 100 bases:

>100_bases
TTTCTGAATTCTTTCGAAAAAATCGTACCATGTTCCCCTCAATTGATTATATACTAGAACTATTCAATTATATTAAATGT
TTGTCATAAGGAGAGATAGC

Downstream 100 bases:

>100_bases
CAGCCATTCACTCACTCTCTAGTATGGACTTTAATAACTGCTGAGGAGGAGTACAATGATTCAAGTTGCATTATTAAGCC
GCTGGCATGTTCATGCCAAT

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MFTQLDAYKEQLPSGNDIREPIHCHMQTSEPNRRIASPHFHDAIELLYSFSGRARVFVSGQPFLMEKGDLVIINSNEVHA
IWGESGEKVEYLVIKLDPEVLYSTSRSIFESKYVFPFTMSKSSPQTLLKSGEMASTVIPATIAKINDEFSHKDYGYDFAI
RIHICTIFLAVLRHWRQSGISVGTESINDSDFQLMRQVFQLLESHYATALTAKQAAATCNLSYSYFSRKIKSITGRSFTE
LLNYIRITEAEKLLTTTDLSITEVAVSVGYSSTSYFIQHFKQAKHLSPLRFKKRLQQSVFDKNETFLS

Sequences:

>Translated_308_residues
MFTQLDAYKEQLPSGNDIREPIHCHMQTSEPNRRIASPHFHDAIELLYSFSGRARVFVSGQPFLMEKGDLVIINSNEVHA
IWGESGEKVEYLVIKLDPEVLYSTSRSIFESKYVFPFTMSKSSPQTLLKSGEMASTVIPATIAKINDEFSHKDYGYDFAI
RIHICTIFLAVLRHWRQSGISVGTESINDSDFQLMRQVFQLLESHYATALTAKQAAATCNLSYSYFSRKIKSITGRSFTE
LLNYIRITEAEKLLTTTDLSITEVAVSVGYSSTSYFIQHFKQAKHLSPLRFKKRLQQSVFDKNETFLS
>Mature_308_residues
MFTQLDAYKEQLPSGNDIREPIHCHMQTSEPNRRIASPHFHDAIELLYSFSGRARVFVSGQPFLMEKGDLVIINSNEVHA
IWGESGEKVEYLVIKLDPEVLYSTSRSIFESKYVFPFTMSKSSPQTLLKSGEMASTVIPATIAKINDEFSHKDYGYDFAI
RIHICTIFLAVLRHWRQSGISVGTESINDSDFQLMRQVFQLLESHYATALTAKQAAATCNLSYSYFSRKIKSITGRSFTE
LLNYIRITEAEKLLTTTDLSITEVAVSVGYSSTSYFIQHFKQAKHLSPLRFKKRLQQSVFDKNETFLS

Specific function: Repressor For The Chbbcarfg Operon (Probable). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788030, Length=295, Percent_Identity=24.7457627118644, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35116; Mature: 35116

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTQLDAYKEQLPSGNDIREPIHCHMQTSEPNRRIASPHFHDAIELLYSFSGRARVFVSG
CCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
QPFLMEKGDLVIINSNEVHAIWGESGEKVEYLVIKLDPEVLYSTSRSIFESKYVFPFTMS
CCEEEECCCEEEEECCCEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEC
KSSPQTLLKSGEMASTVIPATIAKINDEFSHKDYGYDFAIRIHICTIFLAVLRHWRQSGI
CCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC
SVGTESINDSDFQLMRQVFQLLESHYATALTAKQAAATCNLSYSYFSRKIKSITGRSFTE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCHHHH
LLNYIRITEAEKLLTTTDLSITEVAVSVGYSSTSYFIQHFKQAKHLSPLRFKKRLQQSVF
HHHHHHHCCHHHHHEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DKNETFLS
CCCCCCCC
>Mature Secondary Structure
MFTQLDAYKEQLPSGNDIREPIHCHMQTSEPNRRIASPHFHDAIELLYSFSGRARVFVSG
CCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
QPFLMEKGDLVIINSNEVHAIWGESGEKVEYLVIKLDPEVLYSTSRSIFESKYVFPFTMS
CCEEEECCCEEEEECCCEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEEC
KSSPQTLLKSGEMASTVIPATIAKINDEFSHKDYGYDFAIRIHICTIFLAVLRHWRQSGI
CCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCC
SVGTESINDSDFQLMRQVFQLLESHYATALTAKQAAATCNLSYSYFSRKIKSITGRSFTE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCHHHH
LLNYIRITEAEKLLTTTDLSITEVAVSVGYSSTSYFIQHFKQAKHLSPLRFKKRLQQSVF
HHHHHHHCCHHHHHEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DKNETFLS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]