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The map label for this gene is rob [C]

Identifier: 56965042

GI number: 56965042

Start: 3405624

End: 3406187

Strand: Direct

Name: rob [C]

Synonym: ABC3278

Alternate gene names: 56965042

Gene position: 3405624-3406187 (Clockwise)

Preceding gene: 56965041

Following gene: 56965049

Centisome position: 79.13

GC content: 47.34

Gene sequence:

>564_bases
TTGGGTGACGACCACGCCCTTTTGCCATTCGCCCAAGTGAAGCCAGTGCGCCTCTCTTTTACTGGGGGCAGCCGCCAGCA
ATTGGAACAGCATCTAGCCCAGTTACATGATAGCCAAAAGCGGGGCGGCCCTATGGCTGCGCCCCGCTTCCAGTTAGCTT
TTATGGATCTGCTTCTTTATCTTTGCTCCTATTGGGGCACATCACAGAACGAGCTCCCTAAGGGGGAAATGAGCCAAAAA
GAAAAGACCGTCCAAGCGGTCGTCTCCTTTATCGAAAGCCATTATCATGAACATCTCGGCCTTGAAACGATAGAAGAGGC
ACTTCACGTTAGCAAATACCATCTGTCGAAAGTGTTCAAAGAAATGACAGGCGTAACGATTTTTAAATATTTGTATCAGC
GGCGAGTCAACCAAGCGAAAATTGAACTTCTCGTAAGCGACGCCAGCATTACTGATATTTGCTACCAAGTTGGCTTTCAT
TATCCATCCCATTTTACAAAAGTGTTTAAACAATTCACAGGCATCACGCCTGCTCAATACAAGCGCCAAAGCATGTCTGG
CTAA

Upstream 100 bases:

>100_bases
TGGCTTGACACTTCATTGCCCAAAGCTGTATCACGGCCATCCTTATGTCCGCTCAACGATTCACTTTGACCACCGTTTTT
TTCAGGAGGTGTTTCAAGCA

Downstream 100 bases:

>100_bases
GCATTGGCTTAGCCAGAATACACTCGTCGTTAAAGCTGTGCCGCCAATTGCTGTAAGTTGGCGAGGCTTATGCGCAAGCT
GTCCATCGGGTCCCTTTTGC

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MGDDHALLPFAQVKPVRLSFTGGSRQQLEQHLAQLHDSQKRGGPMAAPRFQLAFMDLLLYLCSYWGTSQNELPKGEMSQK
EKTVQAVVSFIESHYHEHLGLETIEEALHVSKYHLSKVFKEMTGVTIFKYLYQRRVNQAKIELLVSDASITDICYQVGFH
YPSHFTKVFKQFTGITPAQYKRQSMSG

Sequences:

>Translated_187_residues
MGDDHALLPFAQVKPVRLSFTGGSRQQLEQHLAQLHDSQKRGGPMAAPRFQLAFMDLLLYLCSYWGTSQNELPKGEMSQK
EKTVQAVVSFIESHYHEHLGLETIEEALHVSKYHLSKVFKEMTGVTIFKYLYQRRVNQAKIELLVSDASITDICYQVGFH
YPSHFTKVFKQFTGITPAQYKRQSMSG
>Mature_186_residues
GDDHALLPFAQVKPVRLSFTGGSRQQLEQHLAQLHDSQKRGGPMAAPRFQLAFMDLLLYLCSYWGTSQNELPKGEMSQKE
KTVQAVVSFIESHYHEHLGLETIEEALHVSKYHLSKVFKEMTGVTIFKYLYQRRVNQAKIELLVSDASITDICYQVGFHY
PSHFTKVFKQFTGITPAQYKRQSMSG

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2169

COG function: function code F; Adenosine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=99, Percent_Identity=31.3131313131313, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790497, Length=101, Percent_Identity=27.7227722772277, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI171474011, Length=155, Percent_Identity=28.3870967741935, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 21401; Mature: 21270

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDDHALLPFAQVKPVRLSFTGGSRQQLEQHLAQLHDSQKRGGPMAAPRFQLAFMDLLLY
CCCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LCSYWGTSQNELPKGEMSQKEKTVQAVVSFIESHYHEHLGLETIEEALHVSKYHLSKVFK
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EMTGVTIFKYLYQRRVNQAKIELLVSDASITDICYQVGFHYPSHFTKVFKQFTGITPAQY
HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
KRQSMSG
HHHHCCC
>Mature Secondary Structure 
GDDHALLPFAQVKPVRLSFTGGSRQQLEQHLAQLHDSQKRGGPMAAPRFQLAFMDLLLY
CCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LCSYWGTSQNELPKGEMSQKEKTVQAVVSFIESHYHEHLGLETIEEALHVSKYHLSKVFK
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
EMTGVTIFKYLYQRRVNQAKIELLVSDASITDICYQVGFHYPSHFTKVFKQFTGITPAQY
HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHH
KRQSMSG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]