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The map label for this gene is sodA [H]

Identifier: 56964938

GI number: 56964938

Start: 3297498

End: 3298118

Strand: Direct

Name: sodA [H]

Synonym: ABC3174

Alternate gene names: 56964938

Gene position: 3297498-3298118 (Clockwise)

Preceding gene: 56964933

Following gene: 56964939

Centisome position: 76.62

GC content: 45.41

Gene sequence:

>621_bases
ATGGCTACCCATTCATTACCAGAACTAGGCTTCGCTTTTGACGCGCTAGAGCCAACGATTGACAGAAAAACAATGGAAAT
CCATCACGGCAAGCATCATCAAACATACGTTACCAATTTGAATGCGGCATTGGAAAACGAGCCATCGTTGCAAAGCCAAT
CGCTTGAACAATTGCTCGCCAACATCGAGTCACTTCCGGCATCGATTCAAACCCCAGTCCGCAATAATGGCGGCGGCCAC
CTTAACCATTCATTGTTCTGGCAAGTAATTGCCCCGTTAAAAGGCGCAAATGAAATGAGCGCTGCTTTAAAAGAAGCCAT
CGATCAAGCATTCGGCAGTTTTGAAGGCTTTAAAGAAACATTTACTAAAGCAGCAACGACACGTTTTGGCTCAGGCTGGG
CTTGGCTTGTCGTCAATGAAAGCAAAGAGTTAGAAGTTTACAGTACAGCCAACCAAGACAATCCGATTATGGACGGAAAA
CAAGCCATCCTCGGTCTTGATGTTTGGGAGCATGCCTACTATTTGAACTACCAAAACAAGCGGCCAGAGTACATTGCGAA
CTTTTTCTCCATTATTAATTGGGAGGCCGTATCGGAAGCATACGAAAAGGCGATCGGTTAA

Upstream 100 bases:

>100_bases
CGTTCCCCCTTGATTTTTAAAAGGATTTCACGGTATTATAAAGACATGCTTTTTATACTATAAAGTATACAAAGTACATA
AACAAGTTGGAGGGGATTCT

Downstream 100 bases:

>100_bases
AGATAAGAAGGGAGGAAAGCAGTTCAAGCTTTCCGCCTTTCTTTTTTGCTTGGCAAGCACAGGCCGCGAAAGGAGGGAAA
ACGATGGGAATTATTGTGGT

Product: manganese superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MATHSLPELGFAFDALEPTIDRKTMEIHHGKHHQTYVTNLNAALENEPSLQSQSLEQLLANIESLPASIQTPVRNNGGGH
LNHSLFWQVIAPLKGANEMSAALKEAIDQAFGSFEGFKETFTKAATTRFGSGWAWLVVNESKELEVYSTANQDNPIMDGK
QAILGLDVWEHAYYLNYQNKRPEYIANFFSIINWEAVSEAYEKAIG

Sequences:

>Translated_206_residues
MATHSLPELGFAFDALEPTIDRKTMEIHHGKHHQTYVTNLNAALENEPSLQSQSLEQLLANIESLPASIQTPVRNNGGGH
LNHSLFWQVIAPLKGANEMSAALKEAIDQAFGSFEGFKETFTKAATTRFGSGWAWLVVNESKELEVYSTANQDNPIMDGK
QAILGLDVWEHAYYLNYQNKRPEYIANFFSIINWEAVSEAYEKAIG
>Mature_205_residues
ATHSLPELGFAFDALEPTIDRKTMEIHHGKHHQTYVTNLNAALENEPSLQSQSLEQLLANIESLPASIQTPVRNNGGGHL
NHSLFWQVIAPLKGANEMSAALKEAIDQAFGSFEGFKETFTKAATTRFGSGWAWLVVNESKELEVYSTANQDNPIMDGKQ
AILGLDVWEHAYYLNYQNKRPEYIANFFSIINWEAVSEAYEKAIG

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=43.7810945273632, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=43.7810945273632, Blast_Score=166, Evalue=2e-41,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=36.81592039801, Blast_Score=123, Evalue=1e-28,
Organism=Escherichia coli, GI1790342, Length=199, Percent_Identity=53.2663316582915, Blast_Score=218, Evalue=2e-58,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=43.298969072165, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=206, Percent_Identity=41.2621359223301, Blast_Score=150, Evalue=6e-37,
Organism=Caenorhabditis elegans, GI17569479, Length=205, Percent_Identity=38.0487804878049, Blast_Score=149, Evalue=8e-37,
Organism=Saccharomyces cerevisiae, GI6321796, Length=212, Percent_Identity=41.0377358490566, Blast_Score=137, Evalue=1e-33,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=44.1176470588235, Blast_Score=159, Evalue=9e-40,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23014; Mature: 22883

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATHSLPELGFAFDALEPTIDRKTMEIHHGKHHQTYVTNLNAALENEPSLQSQSLEQLLA
CCCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCHHEEHHHHHHCCCCCHHHHHHHHHHH
NIESLPASIQTPVRNNGGGHLNHSLFWQVIAPLKGANEMSAALKEAIDQAFGSFEGFKET
HHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FTKAATTRFGSGWAWLVVNESKELEVYSTANQDNPIMDGKQAILGLDVWEHAYYLNYQNK
HHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
RPEYIANFFSIINWEAVSEAYEKAIG
CHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATHSLPELGFAFDALEPTIDRKTMEIHHGKHHQTYVTNLNAALENEPSLQSQSLEQLLA
CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCHHEEHHHHHHCCCCCHHHHHHHHHHH
NIESLPASIQTPVRNNGGGHLNHSLFWQVIAPLKGANEMSAALKEAIDQAFGSFEGFKET
HHHHCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FTKAATTRFGSGWAWLVVNESKELEVYSTANQDNPIMDGKQAILGLDVWEHAYYLNYQNK
HHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHEEEECCCCC
RPEYIANFFSIINWEAVSEAYEKAIG
CHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]