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The map label for this gene is yobD [H]

Identifier: 56964891

GI number: 56964891

Start: 3257264

End: 3257593

Strand: Direct

Name: yobD [H]

Synonym: ABC3127

Alternate gene names: 56964891

Gene position: 3257264-3257593 (Clockwise)

Preceding gene: 56964878

Following gene: 56964893

Centisome position: 75.68

GC content: 43.33

Gene sequence:

>330_bases
ATGGTCGAGCTGAATAAACGATTGCGCGAGTTGCGAAAGGCCCACCAGTTAACCCAACAAGATGTTGCTTCCTTTCTCGG
CATTACCGAAAGTGCATACGGCTTCTATGAGCAAGGCCGGAACGAACCTTCCCTTCGCAAGCTAAAACAGCTTGCCGAAA
TCTATCACGTTTCCATTTCTTATCTTGCCGGAGAAACAGATCGTATCAATGAACAAACGCAGCGCTATTATTTTAAAGAT
TTGGATAAGGAAGAGCAGGAATTTTTAGAGGAGCAGTTGAAGTTATTTAGAAAGATTCGAAAAAACAGACGATGCAGTGA
CCTCCAATGA

Upstream 100 bases:

>100_bases
ACAAATAATTGGCAGTCAATAGAATGGCACAATAAAAAAGAGTGCAAATTTAAATAAACAGTTGAGTAAATTATTGCGAA
CATGCAGGAAGGGTATGCTT

Downstream 100 bases:

>100_bases
AAATAAGTGCATTTAGAGGTTTACCATTTTACAATTTGGGGAACAAAGCATATAGCACGAATCCCTATTAAAAAGGAGTG
GTCAAAAACATACAAAAAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MVELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSISYLAGETDRINEQTQRYYFKD
LDKEEQEFLEEQLKLFRKIRKNRRCSDLQ

Sequences:

>Translated_109_residues
MVELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSISYLAGETDRINEQTQRYYFKD
LDKEEQEFLEEQLKLFRKIRKNRRCSDLQ
>Mature_109_residues
MVELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSISYLAGETDRINEQTQRYYFKD
LDKEEQEFLEEQLKLFRKIRKNRRCSDLQ

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13160; Mature: 13160

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YLAGETDRINEQTQRYYFKDLDKEEQEFLEEQLKLFRKIRKNRRCSDLQ
HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MVELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
YLAGETDRINEQTQRYYFKDLDKEEQEFLEEQLKLFRKIRKNRRCSDLQ
HHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]