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The map label for this gene is opuCB [H]

Identifier: 56964794

GI number: 56964794

Start: 3152753

End: 3153394

Strand: Direct

Name: opuCB [H]

Synonym: ABC3030

Alternate gene names: 56964794

Gene position: 3152753-3153394 (Clockwise)

Preceding gene: 56964793

Following gene: 56964795

Centisome position: 73.25

GC content: 45.33

Gene sequence:

>642_bases
ATGATCGCGTTTTTTTCAGAATACGGCCATGACTTGCTTTTTAAGACGGGGGAACATCTGTTTATTTCGTTTACGGCGAT
TCTCTTAGGTGTTCTTGTCTCTGTGCCTTTAGGAATTGCCCTAACACGTGTTCCTCGTGTGGCAGACAGGCTTATATCTG
TCATCGGCATTTTGCAGACAGTCCCCAGCCTCGCCATATTAGCCTTTTTTATTCCTATTTTTGGAGCAGGCAAAGTACCG
GCCATTATTGCTTTGTTTTTTTACTCCGTATTGCCGATTTTACGAAACACCTACACAGGTGTTAAAGGCGTCAATCCAAG
CGTGTTGGAAGCAGGCAAAGGCATGGGTATGAACAATATCGAATCGATTTTTAAAATCGAAATTCCCCTTGCATTGCCAG
TTATTATGGCAGGCATCCGTTTAGCAACTGTCTATTTAATCGGCTGGGCTACATTAGCGGCATTTGTCGGCGGCGGCGGG
CTAGGGGATTTCATTTTTGACGGCCTCAATTTATTCCAACCAGCGCTTATCATAGCCGGAACTTTACCTGCCACGATTTT
GGCGCTGCTTGCCGACCGCTTACTGCTGTTAGTAGAGCGTGCATTAACGCCAAAAGGCTACAAACAATCCCAAACATCTT
AA

Upstream 100 bases:

>100_bases
ACTTTGATGAGCCCACAGAACCGTGAGTCGATTGTGCTTGTGTGTTGTGCCTATGTGTCGTACAGCGCTTTTAAAAGCGA
CCCAAGAAGGAGGATAAACG

Downstream 100 bases:

>100_bases
GGGGGGAGGAGAATCACTGTGAAGCCAACAAAAACGATCATTGCTTTTTGCCTTTCAGGGCTTATATTAACTGGGTGTTC
TTTGCCGGGACTATCTGGCC

Product: proline/glycine betaine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MIAFFSEYGHDLLFKTGEHLFISFTAILLGVLVSVPLGIALTRVPRVADRLISVIGILQTVPSLAILAFFIPIFGAGKVP
AIIALFFYSVLPILRNTYTGVKGVNPSVLEAGKGMGMNNIESIFKIEIPLALPVIMAGIRLATVYLIGWATLAAFVGGGG
LGDFIFDGLNLFQPALIIAGTLPATILALLADRLLLLVERALTPKGYKQSQTS

Sequences:

>Translated_213_residues
MIAFFSEYGHDLLFKTGEHLFISFTAILLGVLVSVPLGIALTRVPRVADRLISVIGILQTVPSLAILAFFIPIFGAGKVP
AIIALFFYSVLPILRNTYTGVKGVNPSVLEAGKGMGMNNIESIFKIEIPLALPVIMAGIRLATVYLIGWATLAAFVGGGG
LGDFIFDGLNLFQPALIIAGTLPATILALLADRLLLLVERALTPKGYKQSQTS
>Mature_213_residues
MIAFFSEYGHDLLFKTGEHLFISFTAILLGVLVSVPLGIALTRVPRVADRLISVIGILQTVPSLAILAFFIPIFGAGKVP
AIIALFFYSVLPILRNTYTGVKGVNPSVLEAGKGMGMNNIESIFKIEIPLALPVIMAGIRLATVYLIGWATLAAFVGGGG
LGDFIFDGLNLFQPALIIAGTLPATILALLADRLLLLVERALTPKGYKQSQTS

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=190, Percent_Identity=40.5263157894737, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI1788451, Length=193, Percent_Identity=33.160621761658, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1789033, Length=183, Percent_Identity=30.0546448087432, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786564, Length=141, Percent_Identity=31.2056737588652, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22669; Mature: 22669

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAFFSEYGHDLLFKTGEHLFISFTAILLGVLVSVPLGIALTRVPRVADRLISVIGILQT
CCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPSLAILAFFIPIFGAGKVPAIIALFFYSVLPILRNTYTGVKGVNPSVLEAGKGMGMNNI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHH
ESIFKIEIPLALPVIMAGIRLATVYLIGWATLAAFVGGGGLGDFIFDGLNLFQPALIIAG
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TLPATILALLADRLLLLVERALTPKGYKQSQTS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIAFFSEYGHDLLFKTGEHLFISFTAILLGVLVSVPLGIALTRVPRVADRLISVIGILQT
CCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPSLAILAFFIPIFGAGKVPAIIALFFYSVLPILRNTYTGVKGVNPSVLEAGKGMGMNNI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHH
ESIFKIEIPLALPVIMAGIRLATVYLIGWATLAAFVGGGGLGDFIFDGLNLFQPALIIAG
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TLPATILALLADRLLLLVERALTPKGYKQSQTS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]