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The map label for this gene is ligB [H]

Identifier: 56964573

GI number: 56964573

Start: 2942719

End: 2943552

Strand: Direct

Name: ligB [H]

Synonym: ABC2809

Alternate gene names: 56964573

Gene position: 2942719-2943552 (Clockwise)

Preceding gene: 56964572

Following gene: 56964574

Centisome position: 68.37

GC content: 42.33

Gene sequence:

>834_bases
GTGATAACTATCTTTATTTCCCCTATGCTTTTAAACCGAATAGATACGCCGACGGAAAACAATTGGCTAACTGAACTAAA
GTTTGACGGCATACGCTTGATCATGTCCAAACATGACGGCTTAACACGGCTGTATACCAGACATAAAACTGAGGTTACAA
ACCGATTTCCCGAACTGTGCAACAATGATATTGCCGACGGTACCATTTTAGATGGCGAACTGATTGTACTAAATGATGAT
GGGCAGCCCGACTTTGAGTTGGTCATGTCTCGCTTTCGATCTTCCAAAACAACTCCCCTACTACCCGTGCAGTTTGTGGT
TTTTGACATAATTAAGCACAAACACACCTGTACTACTGCCCTACCCCTCATACAACGCAAAGAGATTCTTTCTAAAGTAT
TACGCCCTCACCCCCACATGACCGAAATTAAGTGGATAGAAGGCCAAGCTGACGCTTATTTTGCTGCCGTAAAAGACAGA
GAATTAGAAGGGATTGTCATAAAAAATCCAACGTCTACTTACAAAATAAACAAACGATCTGACGATTGGCTCAAAGTCAT
TAATTACCAGTACACACAAGGTCTGATTACGGGATATAGGAAAGACGAATTCGGCTTGCTACTAGAAAGTTTCGAGGGCG
AGTCATGGGGAGTCATGGAGCACATGGAACTTAAGCAACGTAAGCAATTTTACCAGATTGCTAAGATGCAGAATGTCACT
GAGGGAAAACAGTTTGTACATTTAGAAACGCCGCTCCCGTGTAGGATACGTTACCGCAACTTAACCAGAAAAGGCTACCT
ACGCATTCCAACTTTTGTTGATTGGCTAATATGA

Upstream 100 bases:

>100_bases
AGTGGATAGATATGCGGGTCATCTATGATGTGCAGCGCATTTAATTCCAGCAATCCCCTAAAGCATAATCACCTCTACTC
ATAATAATATTAGATTAGAG

Downstream 100 bases:

>100_bases
AGGCTGCTGCATATAGACGTAAGCAATATTATATCCTGCCTTGTCACTGGCTTAAAATGGCATACTCGATTACGCACGGG
TATGCTTTTTTGTAGTTGAT

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MITIFISPMLLNRIDTPTENNWLTELKFDGIRLIMSKHDGLTRLYTRHKTEVTNRFPELCNNDIADGTILDGELIVLNDD
GQPDFELVMSRFRSSKTTPLLPVQFVVFDIIKHKHTCTTALPLIQRKEILSKVLRPHPHMTEIKWIEGQADAYFAAVKDR
ELEGIVIKNPTSTYKINKRSDDWLKVINYQYTQGLITGYRKDEFGLLLESFEGESWGVMEHMELKQRKQFYQIAKMQNVT
EGKQFVHLETPLPCRIRYRNLTRKGYLRIPTFVDWLI

Sequences:

>Translated_277_residues
MITIFISPMLLNRIDTPTENNWLTELKFDGIRLIMSKHDGLTRLYTRHKTEVTNRFPELCNNDIADGTILDGELIVLNDD
GQPDFELVMSRFRSSKTTPLLPVQFVVFDIIKHKHTCTTALPLIQRKEILSKVLRPHPHMTEIKWIEGQADAYFAAVKDR
ELEGIVIKNPTSTYKINKRSDDWLKVINYQYTQGLITGYRKDEFGLLLESFEGESWGVMEHMELKQRKQFYQIAKMQNVT
EGKQFVHLETPLPCRIRYRNLTRKGYLRIPTFVDWLI
>Mature_277_residues
MITIFISPMLLNRIDTPTENNWLTELKFDGIRLIMSKHDGLTRLYTRHKTEVTNRFPELCNNDIADGTILDGELIVLNDD
GQPDFELVMSRFRSSKTTPLLPVQFVVFDIIKHKHTCTTALPLIQRKEILSKVLRPHPHMTEIKWIEGQADAYFAAVKDR
ELEGIVIKNPTSTYKINKRSDDWLKVINYQYTQGLITGYRKDEFGLLLESFEGESWGVMEHMELKQRKQFYQIAKMQNVT
EGKQFVHLETPLPCRIRYRNLTRKGYLRIPTFVDWLI

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: NA

Molecular weight: Translated: 32489; Mature: 32489

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIFISPMLLNRIDTPTENNWLTELKFDGIRLIMSKHDGLTRLYTRHKTEVTNRFPELC
CEEEEECHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
NNDIADGTILDGELIVLNDDGQPDFELVMSRFRSSKTTPLLPVQFVVFDIIKHKHTCTTA
CCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHH
LPLIQRKEILSKVLRPHPHMTEIKWIEGQADAYFAAVKDRELEGIVIKNPTSTYKINKRS
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCCCEEEECCCC
DDWLKVINYQYTQGLITGYRKDEFGLLLESFEGESWGVMEHMELKQRKQFYQIAKMQNVT
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
EGKQFVHLETPLPCRIRYRNLTRKGYLRIPTFVDWLI
CCCEEEEECCCCCEEEEEECCCCCCCEECCHHHHHCC
>Mature Secondary Structure
MITIFISPMLLNRIDTPTENNWLTELKFDGIRLIMSKHDGLTRLYTRHKTEVTNRFPELC
CEEEEECHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
NNDIADGTILDGELIVLNDDGQPDFELVMSRFRSSKTTPLLPVQFVVFDIIKHKHTCTTA
CCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHH
LPLIQRKEILSKVLRPHPHMTEIKWIEGQADAYFAAVKDRELEGIVIKNPTSTYKINKRS
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEEECCCCEEEECCCC
DDWLKVINYQYTQGLITGYRKDEFGLLLESFEGESWGVMEHMELKQRKQFYQIAKMQNVT
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
EGKQFVHLETPLPCRIRYRNLTRKGYLRIPTFVDWLI
CCCEEEEECCCCCEEEEEECCCCCCCEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]