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The map label for this gene is rtcB [H]

Identifier: 56963684

GI number: 56963684

Start: 2033229

End: 2034458

Strand: Direct

Name: rtcB [H]

Synonym: ABC1919

Alternate gene names: 56963684

Gene position: 2033229-2034458 (Clockwise)

Preceding gene: 56963683

Following gene: 56963685

Centisome position: 47.24

GC content: 47.72

Gene sequence:

>1230_bases
ATGTATAAAACGATCGATGGTGTCCGCGTGTGGGGAGATCCACTTGAAAACGCTGTTGAACAGGCCGTTCGCTGCAGCCA
GCATGGCGATGTTGTCCAAACGTTATTAATGGCTGACCACCATAAAGGCTACAGCCAACCGGTAGGAGGCGTTGTCGTCT
ATGACGGCCAAGTATCCCCTTCTGGAGTCGGTTATGATATTGCCTGTGGCAACAAAGCAGTGCGCACAAATGTTACTTTC
GAGGAGATTCGCTTGGCGCTGCCTCAGCTTCTCGACGAAATTTACGAAACGCTCTCGTTCGGCATTGGCCAAAAAAACAA
GCAGCCAGTTGACCATGAACTGTTTTCTGATCCTGACTGGCATGTGTTTTCGGAAATTGAACCGGGGCTTACAGACACAT
TACAAACATTGGCGCGTAACCAACTCGGAACGATTGGGAGCGGCAACCATTTCGTTGATTTGTTTGTGGAAGAAGAAACA
GGCATTTTATGGGTCGCGAACCATTTTGGCAGTAGGGGGTTAGGCCATAAAACAGCTAGCGGTTTTTTGAACTTGGCGAA
AAACAAGCCGTTTGCCAGCAAAGTTAGCGGGGAGAGCATGGAGGATGTACCGACTTTGTTTGATGTTGCCTCCGAGTTAG
GTGACATGTACATCCGAGCAATGAACTTAGCCGGAAAATACGCATATGCCGGCAGAGACCATTGTATTGCTAAAGTGCTC
GCCATTTTGCAAGCAAAAGAAACGTTCTCTGTTCATAACCATCATAACTTTGCTTGGAAGGAAACGCACAATGGCAAAGA
CGTTTATGTTGTCCGCAAAGGAGCAACGCCTTCTGCTCCAGGACAGCTTGGATTTATCGGTGGCAGTATGGGTGATTATT
CAGTCATTGTTGAGGGCATTGATAGCAAGGAAAACAAGGACGCTTTTTACAGCACCGTCCATGGCGCTGGCAGATTAATG
AGCCGTACACAGGCGGCGGGCCGTTTTACAGGGAAAGGCAAGAACAGACGCCGTAGCGGCGGAGCAATTAGCTCTGAGCA
AATGGCAGCTGCGCTTGCTGCGTTTGGAGTGGAATTGCGCGGCGGAGGCACAGATGAAAGCCCGTTCGTATATAAAAAAT
TAGATACGGTCCTCTCTGCTCATAAAAATACGATTAAAATAAAACACCGCTTAAAGCCTGTTGGTGTTTGTATGGCTGGC
GAAAATGAATTTGATCCATACAAAGATTAA

Upstream 100 bases:

>100_bases
TGTGGTTTTGCTTACAAAAACGAATTTAAAGAGCGGCTATTTGGCCATGTCTTTCATACAGTAAAAATGGTATTCAAACG
GGATGGAGAGGGAAACACAT

Downstream 100 bases:

>100_bases
GGGTGTTACAGCTGTGCAATAAAAGCATTACCTAGGCGAGATGAGAAAAACGCTTAATTATTCTCCTGCTGTTTATGGAA
ACTGAAACGTTGTCGATGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MYKTIDGVRVWGDPLENAVEQAVRCSQHGDVVQTLLMADHHKGYSQPVGGVVVYDGQVSPSGVGYDIACGNKAVRTNVTF
EEIRLALPQLLDEIYETLSFGIGQKNKQPVDHELFSDPDWHVFSEIEPGLTDTLQTLARNQLGTIGSGNHFVDLFVEEET
GILWVANHFGSRGLGHKTASGFLNLAKNKPFASKVSGESMEDVPTLFDVASELGDMYIRAMNLAGKYAYAGRDHCIAKVL
AILQAKETFSVHNHHNFAWKETHNGKDVYVVRKGATPSAPGQLGFIGGSMGDYSVIVEGIDSKENKDAFYSTVHGAGRLM
SRTQAAGRFTGKGKNRRRSGGAISSEQMAAALAAFGVELRGGGTDESPFVYKKLDTVLSAHKNTIKIKHRLKPVGVCMAG
ENEFDPYKD

Sequences:

>Translated_409_residues
MYKTIDGVRVWGDPLENAVEQAVRCSQHGDVVQTLLMADHHKGYSQPVGGVVVYDGQVSPSGVGYDIACGNKAVRTNVTF
EEIRLALPQLLDEIYETLSFGIGQKNKQPVDHELFSDPDWHVFSEIEPGLTDTLQTLARNQLGTIGSGNHFVDLFVEEET
GILWVANHFGSRGLGHKTASGFLNLAKNKPFASKVSGESMEDVPTLFDVASELGDMYIRAMNLAGKYAYAGRDHCIAKVL
AILQAKETFSVHNHHNFAWKETHNGKDVYVVRKGATPSAPGQLGFIGGSMGDYSVIVEGIDSKENKDAFYSTVHGAGRLM
SRTQAAGRFTGKGKNRRRSGGAISSEQMAAALAAFGVELRGGGTDESPFVYKKLDTVLSAHKNTIKIKHRLKPVGVCMAG
ENEFDPYKD
>Mature_409_residues
MYKTIDGVRVWGDPLENAVEQAVRCSQHGDVVQTLLMADHHKGYSQPVGGVVVYDGQVSPSGVGYDIACGNKAVRTNVTF
EEIRLALPQLLDEIYETLSFGIGQKNKQPVDHELFSDPDWHVFSEIEPGLTDTLQTLARNQLGTIGSGNHFVDLFVEEET
GILWVANHFGSRGLGHKTASGFLNLAKNKPFASKVSGESMEDVPTLFDVASELGDMYIRAMNLAGKYAYAGRDHCIAKVL
AILQAKETFSVHNHHNFAWKETHNGKDVYVVRKGATPSAPGQLGFIGGSMGDYSVIVEGIDSKENKDAFYSTVHGAGRLM
SRTQAAGRFTGKGKNRRRSGGAISSEQMAAALAAFGVELRGGGTDESPFVYKKLDTVLSAHKNTIKIKHRLKPVGVCMAG
ENEFDPYKD

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=445, Percent_Identity=26.7415730337079, Blast_Score=109, Evalue=4e-24,
Organism=Escherichia coli, GI2367224, Length=427, Percent_Identity=30.6791569086651, Blast_Score=177, Evalue=1e-45,
Organism=Drosophila melanogaster, GI24585217, Length=445, Percent_Identity=26.0674157303371, Blast_Score=96, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44480; Mature: 44480

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKTIDGVRVWGDPLENAVEQAVRCSQHGDVVQTLLMADHHKGYSQPVGGVVVYDGQVSP
CCCCCCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
SGVGYDIACGNKAVRTNVTFEEIRLALPQLLDEIYETLSFGIGQKNKQPVDHELFSDPDW
CCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC
HVFSEIEPGLTDTLQTLARNQLGTIGSGNHFVDLFVEEETGILWVANHFGSRGLGHKTAS
EECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHH
GFLNLAKNKPFASKVSGESMEDVPTLFDVASELGDMYIRAMNLAGKYAYAGRDHCIAKVL
HHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHH
AILQAKETFSVHNHHNFAWKETHNGKDVYVVRKGATPSAPGQLGFIGGSMGDYSVIVEGI
HHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEECC
DSKENKDAFYSTVHGAGRLMSRTQAAGRFTGKGKNRRRSGGAISSEQMAAALAAFGVELR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEE
GGGTDESPFVYKKLDTVLSAHKNTIKIKHRLKPVGVCMAGENEFDPYKD
CCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MYKTIDGVRVWGDPLENAVEQAVRCSQHGDVVQTLLMADHHKGYSQPVGGVVVYDGQVSP
CCCCCCCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
SGVGYDIACGNKAVRTNVTFEEIRLALPQLLDEIYETLSFGIGQKNKQPVDHELFSDPDW
CCCCEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCC
HVFSEIEPGLTDTLQTLARNQLGTIGSGNHFVDLFVEEETGILWVANHFGSRGLGHKTAS
EECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHH
GFLNLAKNKPFASKVSGESMEDVPTLFDVASELGDMYIRAMNLAGKYAYAGRDHCIAKVL
HHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHH
AILQAKETFSVHNHHNFAWKETHNGKDVYVVRKGATPSAPGQLGFIGGSMGDYSVIVEGI
HHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCCCEEEEEECC
DSKENKDAFYSTVHGAGRLMSRTQAAGRFTGKGKNRRRSGGAISSEQMAAALAAFGVELR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCEEEE
GGGTDESPFVYKKLDTVLSAHKNTIKIKHRLKPVGVCMAGENEFDPYKD
CCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]