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The map label for this gene is recO

Identifier: 56963448

GI number: 56963448

Start: 1810946

End: 1811716

Strand: Direct

Name: recO

Synonym: ABC1683

Alternate gene names: 56963448

Gene position: 1810946-1811716 (Clockwise)

Preceding gene: 56963447

Following gene: 56963449

Centisome position: 42.08

GC content: 44.62

Gene sequence:

>771_bases
ATGTTAAAAAAACAAGATGCAATCGTGCTAAAATCAATTGATTACGGCGAAACGAATAAAATCGTAACTCTTTTTACAAA
AGAAGACGGCAAACTTGCTGTTTTGGCGAAGGGGGCAAAAAAGCCTAACAGTCGCTTTGCCGCTGTCACACAGCCGTTTG
TTTATGGAAGTTACTTATATTTTCAAGGAAACGGTCTTCCCTCTTTAAGCCAGGGGGAGGCCGTCGATTCATTTAAAGAA
CTGCAATTTGATATCGTTAAATCGGCTTATGCGGCTTATATAACGGAACTTGTCGACAAACTGACGGAAGAGCGCAAACC
GACGTTCTTTTTATTTGATTGGCTTCTGCTGGCGTTGCGGCAAATCAACACCGGACAAGACGCGGAAATAATTGCACGAA
TCATGGATATGAAGATGCTTCCACTAGCTGGAGCAAAACCGGAGCTAGATTGCTGTGCCTGTTGCCGCTCGGAGACCCGT
GATCCTGTTGCTTTTTCAGTTGCTTATGCTGGTTTTTTGTGCAGCAATTGTATTCATAAAGACGAGCGCGCTTTCCCAAT
CACTCTACCATTTGCCAAGTTGTTTCGAGTGCTTTATTACGTCGATTTGACGAAAGTAGGCACCATTTCTGTGAAAGCTG
AAACGAAGCGGCGGTTGGAATGGATGATCCGCACCTACTACGATGAGTATGTGGGGGTACAGTTAAAAGCGCGCCGCTTT
ATTAGCCAACTAGACAAAATGGGCGGCTTAAGCAGTGACGTTGACAAGTAG

Upstream 100 bases:

>100_bases
GAGCGGGACATGGAAGTGCAAGAAGAAACGGCTTATGAACCAGATGATTTATCGGATTCAACCTTATCTTAAATCCTGTT
GCTTGCTGTAAGGATGGACC

Downstream 100 bases:

>100_bases
GGGGAGCAAGCGTATAATGTGGATACGATTATAGGTGCAGTGACGGAAAAAAACAGCATTTGCCGTCTGGTTTGTAGCGA
CTTTGGGAGGGTGGAAGCCA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLKKQDAIVLKSIDYGETNKIVTLFTKEDGKLAVLAKGAKKPNSRFAAVTQPFVYGSYLYFQGNGLPSLSQGEAVDSFKE
LQFDIVKSAYAAYITELVDKLTEERKPTFFLFDWLLLALRQINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETR
DPVAFSVAYAGFLCSNCIHKDERAFPITLPFAKLFRVLYYVDLTKVGTISVKAETKRRLEWMIRTYYDEYVGVQLKARRF
ISQLDKMGGLSSDVDK

Sequences:

>Translated_256_residues
MLKKQDAIVLKSIDYGETNKIVTLFTKEDGKLAVLAKGAKKPNSRFAAVTQPFVYGSYLYFQGNGLPSLSQGEAVDSFKE
LQFDIVKSAYAAYITELVDKLTEERKPTFFLFDWLLLALRQINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETR
DPVAFSVAYAGFLCSNCIHKDERAFPITLPFAKLFRVLYYVDLTKVGTISVKAETKRRLEWMIRTYYDEYVGVQLKARRF
ISQLDKMGGLSSDVDK
>Mature_256_residues
MLKKQDAIVLKSIDYGETNKIVTLFTKEDGKLAVLAKGAKKPNSRFAAVTQPFVYGSYLYFQGNGLPSLSQGEAVDSFKE
LQFDIVKSAYAAYITELVDKLTEERKPTFFLFDWLLLALRQINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETR
DPVAFSVAYAGFLCSNCIHKDERAFPITLPFAKLFRVLYYVDLTKVGTISVKAETKRRLEWMIRTYYDEYVGVQLKARRF
ISQLDKMGGLSSDVDK

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_BACSK (Q5WHD7)

Other databases:

- EMBL:   AP006627
- RefSeq:   YP_175179.1
- ProteinModelPortal:   Q5WHD7
- SMR:   Q5WHD7
- STRING:   Q5WHD7
- EnsemblBacteria:   EBBACT00000049780
- GeneID:   3202857
- GenomeReviews:   AP006627_GR
- KEGG:   bcl:ABC1683
- NMPDR:   fig|66692.3.peg.66
- eggNOG:   COG1381
- GeneTree:   EBGT00050000001475
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- ProtClustDB:   PRK00085
- BioCyc:   BCLA66692:ABC1683-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 28946; Mature: 28946

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKQDAIVLKSIDYGETNKIVTLFTKEDGKLAVLAKGAKKPNSRFAAVTQPFVYGSYLY
CCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEECCCCCEEEEEEE
FQGNGLPSLSQGEAVDSFKELQFDIVKSAYAAYITELVDKLTEERKPTFFLFDWLLLALR
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
QINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETRDPVAFSVAYAGFLCSNCIHK
HCCCCCCHHHHHHHHCCHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
DERAFPITLPFAKLFRVLYYVDLTKVGTISVKAETKRRLEWMIRTYYDEYVGVQLKARRF
CCCCCEEECCHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ISQLDKMGGLSSDVDK
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLKKQDAIVLKSIDYGETNKIVTLFTKEDGKLAVLAKGAKKPNSRFAAVTQPFVYGSYLY
CCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEECCCCCEEEEEEE
FQGNGLPSLSQGEAVDSFKELQFDIVKSAYAAYITELVDKLTEERKPTFFLFDWLLLALR
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHH
QINTGQDAEIIARIMDMKMLPLAGAKPELDCCACCRSETRDPVAFSVAYAGFLCSNCIHK
HCCCCCCHHHHHHHHCCHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
DERAFPITLPFAKLFRVLYYVDLTKVGTISVKAETKRRLEWMIRTYYDEYVGVQLKARRF
CCCCCEEECCHHHHHHHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHHHHHCHHHHHHHH
ISQLDKMGGLSSDVDK
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA