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The map label for this gene is ycdC [C]

Identifier: 56963017

GI number: 56963017

Start: 1358168

End: 1358758

Strand: Direct

Name: ycdC [C]

Synonym: ABC1245

Alternate gene names: 56963017

Gene position: 1358168-1358758 (Clockwise)

Preceding gene: 56963016

Following gene: 56963018

Centisome position: 31.56

GC content: 44.5

Gene sequence:

>591_bases
ATGACAGCTAAAGACATTAAAGCCGCCGCGTTTAAATTTTTTTCACGGCATGGCTATGAAGGCGCATCGTTGTCGCAAAT
CGCCCATGAAGCGGGCATAAAGAAACAGAGCATTTATACGCATTTTGACGGGAAAGACGATTTGTTTATGCAAGTCGTTC
ATGATGTGGCTGAGTTGGAATTGGGTATGAAAAAGCAGCTGCTCGAAGACTTCGAAGACGAAGCCTTTGAACAACAACTT
TACCGTTATGTGTCTGAACATAAACGACTTGTAGAGGAAGATGAACGGTTTTTCTTTTGGCTGCGAATTTCGTTTTTCCC
GCCCGTTCACCTTTATGATGAAGTTGAGGAGATCTTTATGCGCAATGAGGAGCAAATTGAAAGGCTCATCTATCAGTTGT
TTGCGAAAGCGATAAAGGCGAAACGAATCGGAAGCCAAAACCCGGAAACGCCGACGCTTGCTTTTATGGCATTGTTGGAT
GCTTTGGCTATTGAGCTCGTGTATGGGGCAGATAAAGAAAGAATCAAGAAAAAGACGGCTGCTGGCTGGGCCGTTTTTTG
GCGAGGAATTATGGCAGGTGAAGATACGTGA

Upstream 100 bases:

>100_bases
GTGCTTCCAAGCTGGCTCGTTCTCTTAAAAAATAAAACTAGTCTTTCCGAGCAGCATTTGCTATAATTTCCTGACGAACG
TTCGGAAGGTGGGGTGGAAA

Downstream 100 bases:

>100_bases
GTACACAACATACACAAAATCCTTTAGACACACAACCAATAGGGAAAATATTTCTCCGTTATTTAATCCCATCATTAGTT
GGGATGATTTTAATGGCTGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTAKDIKAAAFKFFSRHGYEGASLSQIAHEAGIKKQSIYTHFDGKDDLFMQVVHDVAELELGMKKQLLEDFEDEAFEQQL
YRYVSEHKRLVEEDERFFFWLRISFFPPVHLYDEVEEIFMRNEEQIERLIYQLFAKAIKAKRIGSQNPETPTLAFMALLD
ALAIELVYGADKERIKKKTAAGWAVFWRGIMAGEDT

Sequences:

>Translated_196_residues
MTAKDIKAAAFKFFSRHGYEGASLSQIAHEAGIKKQSIYTHFDGKDDLFMQVVHDVAELELGMKKQLLEDFEDEAFEQQL
YRYVSEHKRLVEEDERFFFWLRISFFPPVHLYDEVEEIFMRNEEQIERLIYQLFAKAIKAKRIGSQNPETPTLAFMALLD
ALAIELVYGADKERIKKKTAAGWAVFWRGIMAGEDT
>Mature_195_residues
TAKDIKAAAFKFFSRHGYEGASLSQIAHEAGIKKQSIYTHFDGKDDLFMQVVHDVAELELGMKKQLLEDFEDEAFEQQLY
RYVSEHKRLVEEDERFFFWLRISFFPPVHLYDEVEEIFMRNEEQIERLIYQLFAKAIKAKRIGSQNPETPTLAFMALLDA
LAIELVYGADKERIKKKTAAGWAVFWRGIMAGEDT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22854; Mature: 22723

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKDIKAAAFKFFSRHGYEGASLSQIAHEAGIKKQSIYTHFDGKDDLFMQVVHDVAELE
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHH
LGMKKQLLEDFEDEAFEQQLYRYVSEHKRLVEEDERFFFWLRISFFPPVHLYDEVEEIFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHC
RNEEQIERLIYQLFAKAIKAKRIGSQNPETPTLAFMALLDALAIELVYGADKERIKKKTA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGWAVFWRGIMAGEDT
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAKDIKAAAFKFFSRHGYEGASLSQIAHEAGIKKQSIYTHFDGKDDLFMQVVHDVAELE
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHHHH
LGMKKQLLEDFEDEAFEQQLYRYVSEHKRLVEEDERFFFWLRISFFPPVHLYDEVEEIFM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHC
RNEEQIERLIYQLFAKAIKAKRIGSQNPETPTLAFMALLDALAIELVYGADKERIKKKTA
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGWAVFWRGIMAGEDT
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA