| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is slpA
Identifier: 55981862
GI number: 55981862
Start: 1777608
End: 1780394
Strand: Reverse
Name: slpA
Synonym: TTHA1893
Alternate gene names: 55981862
Gene position: 1780394-1777608 (Counterclockwise)
Preceding gene: 55981863
Following gene: 55981861
Centisome position: 96.25
GC content: 67.17
Gene sequence:
>2787_bases ATGAAGAAAAGGCTGGTCACACTACTGGCAGGGCTCTTGACCGTCCTCTCCATGGGGTTCGGTCTGGCCCAGTTCTCCGA CGTGCCCGCCGGGCACTGGGCCAAGGAGGCCGTGGAGGCCCTGGCGGCCAAGGGCATCATCCTGGGCTTCCCGGACGGCA CCTTCCGGGGCAACGAGAACCTCACCCGCTACCAGGCGGCCCTCCTCATCTACCGGCTCTTGCAGCAGATTGAGGAGGAG CTGAAGACCCAGGGCACCTCCCCCACCATGGAGGCCCTGGCCCCCGAGGACCTCGAGGCCCTGAAGAACGCCGTCCAGGA GCTCGCCGCCGAGCTCGCTTCCCTGGGCGTGCGGGTCTCCGCCCTGGAGGACAGCGCCGCCACCAAGGAGGACATCGCCC GCCTCGAGGCGATGATCGCCGAGCTCAAGGCCCAGCCCATGCCCGAGCCCGGCATGGACCAGGCGGCCCTTAAGGACCTC ATGGACCGGGTGGAGGCCGCCTCCATCGCCGCCGACACCGCCCTCGCCCAGGCCCAGCAGCTCGCCGAGCGGCTGGACGC CCTGGCTCAGGACGTGGAGGGCGTGAAGGGCGACCTGGCCGGGCTTAGGAGCCAGGTGGAGGCCAACGCCGACGCCATCC AGGCCCTGAACGAGCTCGCCGTCCTCCTGAACCAGGACGTCCTCTCCCTCCAGGACCGGGTCACCGCCCTGGAGAAGATG GTCTCCGGCGGCCAGGAGCTCCCCGACCTGGAGCAGTTCGCCACCAAGGAGGACGTGGCCGCCGTCCAGGAGTTCGCCGC CGCCCTGCGCTCCGACCTGGTGGGCCTCTCCGACAAGGTCTCCAAGCTGGAAGAACAGGTGGCCGAGCTCAACAAGGTGC GCTACTCCATCTCCGGTAGCCTCTCCGCCACCTACGGCACGGTGGTGACCGACACCGGCACCAACTTTGACATTGACCGC CTCTTCCCGGGCAACGCCTTCTCCACGGGGACCTACGGCTCCTTCTCCTCCAGCGTCCAGGCGGGGGACAGCAACCAGGG CAACATCTCGGGGGGCTCCGCTTCCCTCACCTTCGGCGTGAAGGTGGCCCAGCCCGGCACGAGCGGGGTGAACGTCTCCG AGGCCAGCGCCACCCTCCAGGTGCCCGCGGCTTTCGGGACCGCTTACACCTCTGCTCCCACCATCCGCCTCAACGCCGCG AGCGTCAAGGGCAACGTGGACGGCCAGGCCTTCAGCGTGGTCTACAGCCGGGCGGTGAGCAGCTTCAAGTTCAACGACTA CCTCTTCGCCAACGACAACGACTCTGAGCCGGCCAACCCCCGCCAGGGTATGGTGGCCACCTTCTCCGCCACCAAGTTCC CCCTTGCCCCCGAGGTGACCGTGGTGGCCGGGGTGGCCGGACCTGATGCTACTAAGGATACTGCTCCTGCCCTAAACGGC AACTACTTCGGCATCCGCACCGCCGTCAAGCCCTTCTCCGCCCTCAACCTGGCCCTGAACTACGCCACCAACCTGGGCAA CCGCTCCGCCATTGGCGTGGACGGCGGGCTGGAGCTCGGCCCCGCCAAGCTCTCCGGCCTCTGGGTCTCCTCCCAGACCC CCGGGAGCCCCTTCGCCGACTTCTTTGACAACACCCTCTCCGACTGGGCGTATTACGCCCAGGCCGAGGCGAAGCTCGGG CCTCTTTCCCTCTCCGCCAACTACCACGCCGTGGACCCGCAGTACGCCGACGGCCAGGCGGGCATGTCCGAGAACGAGGA CACCACCTACTACGGCGGTGAGAAGGCAGGCGCTCCCTACGGGGCGGACACCCGCGGCCTGGGCGTCTCCGCCAGCGTGG GCTTCGGCCCCGTTACCCTCAAGGGCTACGCCGAGAGCGAGGGGGACTACAACCTGGCTCCGGGCAGCGTCAACGACGCT TGGGGCGTGGCCGCTACCTTGGGGTCCTTCCGGGGATTCAGCCTGACGGGCTTCTACAACGCCGCCTACACCGGTGGTAA CGGTTACTTCTCCCTTACCACCGCTGTGGACGCCATTGCTCCGGGTGTGACTTACTACTACACCATTGAGAACCAGAAGT ACTCCTCCAGCTGGGGCGTGCGGGTGGCCCACGACGGCAAGGCCGAGGACGCCCTAATCCCCACCCTCAACCTCACCGCC CAGTACGCCACCTACTACGTCTCCGGCCACACGGACATCCAGGTCTACGCCGACCTGGCCAAGCCCTTCAAGCTGGCCAT CCTGAGCCTCTCCCCGGGCTTCCGCTACCACAGCTTCGCTGGTGCGGGTAGCGCCCCGACCTACACCACCCTGAAGGGCG GGGTCCAGGTTTCCACCGATCCCCTCCTCTTCGGTCTCAGCCTGGACGGGGCGGTCTCCTACCGCCGGACGCAGTACACC AACAACCCCTCCAACGTGACCACCTACGAGCTCTACTACCGCGCCGGGGTGAAGCTCCAGGACTTCCTGGCCCCCAAGCT CAACTTCAGCGTGGCCTACGCCCACTACGAGGGCGATCAGCTTGCCGGCACCGGCCTCCCCGTGGTGGGGTCCGGCAACC AGGCCTTCAACTTCGCCCGCGACCGGGTCTACCGGAGCCCCGATCCCATCGCTGCTCCTTGGCTGGCCACTCCGGGCACC CAGGCGGGCAAGCTGGACGGCTTCTACATTGAGGCCAAGTACTACGACCTCACCGTGGCCTACGGGGAGTTCGTCCTGGA TGACCTCAACGGGACCAACCCCAACTTCGGCCGGGGCTTCAAGATCAGCTACACCGTGAAGTTCTAA
Upstream 100 bases:
>100_bases GGGGGTTTTCCCCGCACCGGGCGGACCTGGTCGGAGAGGAAACGCGGCAACTCGCCCGTCTCGGGTTCCCGCCCACGACC CTTAAGGGGGTGTGAGGCAT
Downstream 100 bases:
>100_bases CCCTGGCGGTCCCGCCCCCGCCCCCCCAAAGGGGGCGGGGGTTTTTGTTCTCCCCCTTCCTTTGGGGAGGCGAGGGGGCC CCTATACTGGGTGAGGATGA
Product: S-layer P100 protein)
Products: NA
Alternate protein names: P100 protein; Surface layer protein
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MKKRLVTLLAGLLTVLSMGFGLAQFSDVPAGHWAKEAVEALAAKGIILGFPDGTFRGNENLTRYQAALLIYRLLQQIEEE LKTQGTSPTMEALAPEDLEALKNAVQELAAELASLGVRVSALEDSAATKEDIARLEAMIAELKAQPMPEPGMDQAALKDL MDRVEAASIAADTALAQAQQLAERLDALAQDVEGVKGDLAGLRSQVEANADAIQALNELAVLLNQDVLSLQDRVTALEKM VSGGQELPDLEQFATKEDVAAVQEFAAALRSDLVGLSDKVSKLEEQVAELNKVRYSISGSLSATYGTVVTDTGTNFDIDR LFPGNAFSTGTYGSFSSSVQAGDSNQGNISGGSASLTFGVKVAQPGTSGVNVSEASATLQVPAAFGTAYTSAPTIRLNAA SVKGNVDGQAFSVVYSRAVSSFKFNDYLFANDNDSEPANPRQGMVATFSATKFPLAPEVTVVAGVAGPDATKDTAPALNG NYFGIRTAVKPFSALNLALNYATNLGNRSAIGVDGGLELGPAKLSGLWVSSQTPGSPFADFFDNTLSDWAYYAQAEAKLG PLSLSANYHAVDPQYADGQAGMSENEDTTYYGGEKAGAPYGADTRGLGVSASVGFGPVTLKGYAESEGDYNLAPGSVNDA WGVAATLGSFRGFSLTGFYNAAYTGGNGYFSLTTAVDAIAPGVTYYYTIENQKYSSSWGVRVAHDGKAEDALIPTLNLTA QYATYYVSGHTDIQVYADLAKPFKLAILSLSPGFRYHSFAGAGSAPTYTTLKGGVQVSTDPLLFGLSLDGAVSYRRTQYT NNPSNVTTYELYYRAGVKLQDFLAPKLNFSVAYAHYEGDQLAGTGLPVVGSGNQAFNFARDRVYRSPDPIAAPWLATPGT QAGKLDGFYIEAKYYDLTVAYGEFVLDDLNGTNPNFGRGFKISYTVKF
Sequences:
>Translated_928_residues MKKRLVTLLAGLLTVLSMGFGLAQFSDVPAGHWAKEAVEALAAKGIILGFPDGTFRGNENLTRYQAALLIYRLLQQIEEE LKTQGTSPTMEALAPEDLEALKNAVQELAAELASLGVRVSALEDSAATKEDIARLEAMIAELKAQPMPEPGMDQAALKDL MDRVEAASIAADTALAQAQQLAERLDALAQDVEGVKGDLAGLRSQVEANADAIQALNELAVLLNQDVLSLQDRVTALEKM VSGGQELPDLEQFATKEDVAAVQEFAAALRSDLVGLSDKVSKLEEQVAELNKVRYSISGSLSATYGTVVTDTGTNFDIDR LFPGNAFSTGTYGSFSSSVQAGDSNQGNISGGSASLTFGVKVAQPGTSGVNVSEASATLQVPAAFGTAYTSAPTIRLNAA SVKGNVDGQAFSVVYSRAVSSFKFNDYLFANDNDSEPANPRQGMVATFSATKFPLAPEVTVVAGVAGPDATKDTAPALNG NYFGIRTAVKPFSALNLALNYATNLGNRSAIGVDGGLELGPAKLSGLWVSSQTPGSPFADFFDNTLSDWAYYAQAEAKLG PLSLSANYHAVDPQYADGQAGMSENEDTTYYGGEKAGAPYGADTRGLGVSASVGFGPVTLKGYAESEGDYNLAPGSVNDA WGVAATLGSFRGFSLTGFYNAAYTGGNGYFSLTTAVDAIAPGVTYYYTIENQKYSSSWGVRVAHDGKAEDALIPTLNLTA QYATYYVSGHTDIQVYADLAKPFKLAILSLSPGFRYHSFAGAGSAPTYTTLKGGVQVSTDPLLFGLSLDGAVSYRRTQYT NNPSNVTTYELYYRAGVKLQDFLAPKLNFSVAYAHYEGDQLAGTGLPVVGSGNQAFNFARDRVYRSPDPIAAPWLATPGT QAGKLDGFYIEAKYYDLTVAYGEFVLDDLNGTNPNFGRGFKISYTVKF >Mature_928_residues MKKRLVTLLAGLLTVLSMGFGLAQFSDVPAGHWAKEAVEALAAKGIILGFPDGTFRGNENLTRYQAALLIYRLLQQIEEE LKTQGTSPTMEALAPEDLEALKNAVQELAAELASLGVRVSALEDSAATKEDIARLEAMIAELKAQPMPEPGMDQAALKDL MDRVEAASIAADTALAQAQQLAERLDALAQDVEGVKGDLAGLRSQVEANADAIQALNELAVLLNQDVLSLQDRVTALEKM VSGGQELPDLEQFATKEDVAAVQEFAAALRSDLVGLSDKVSKLEEQVAELNKVRYSISGSLSATYGTVVTDTGTNFDIDR LFPGNAFSTGTYGSFSSSVQAGDSNQGNISGGSASLTFGVKVAQPGTSGVNVSEASATLQVPAAFGTAYTSAPTIRLNAA SVKGNVDGQAFSVVYSRAVSSFKFNDYLFANDNDSEPANPRQGMVATFSATKFPLAPEVTVVAGVAGPDATKDTAPALNG NYFGIRTAVKPFSALNLALNYATNLGNRSAIGVDGGLELGPAKLSGLWVSSQTPGSPFADFFDNTLSDWAYYAQAEAKLG PLSLSANYHAVDPQYADGQAGMSENEDTTYYGGEKAGAPYGADTRGLGVSASVGFGPVTLKGYAESEGDYNLAPGSVNDA WGVAATLGSFRGFSLTGFYNAAYTGGNGYFSLTTAVDAIAPGVTYYYTIENQKYSSSWGVRVAHDGKAEDALIPTLNLTA QYATYYVSGHTDIQVYADLAKPFKLAILSLSPGFRYHSFAGAGSAPTYTTLKGGVQVSTDPLLFGLSLDGAVSYRRTQYT NNPSNVTTYELYYRAGVKLQDFLAPKLNFSVAYAHYEGDQLAGTGLPVVGSGNQAFNFARDRVYRSPDPIAAPWLATPGT QAGKLDGFYIEAKYYDLTVAYGEFVLDDLNGTNPNFGRGFKISYTVKF
Specific function: The S-layer is a paracrystalline mono-layered assembly of proteins which coat the surface of bacteria
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall, S-layer. Note=This bacterium is covered by a S-layer with hexagonal symmetry (By similarity)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SLH (S-layer homology) domain
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SLAP1_THET8 (Q5SH37)
Other databases:
- EMBL: AP008226 - RefSeq: YP_145159.1 - ProteinModelPortal: Q5SH37 - STRING: Q5SH37 - GeneID: 3168016 - GenomeReviews: AP008226_GR - KEGG: ttj:TTHA1893 - NMPDR: fig|300852.3.peg.1504 - HOGENOM: HBG449923 - OMA: LFANDND - ProtClustDB: CLSK751157 - BioCyc: TTHE300852:TTHA1893-MONOMER - GO: GO:0030115 - InterPro: IPR001119
Pfam domain/function: PF00395 SLH
EC number: NA
Molecular weight: Translated: 98038; Mature: 98038
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS51272 SLH; PS01072 SLH_DOMAIN ; PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRLVTLLAGLLTVLSMGFGLAQFSDVPAGHWAKEAVEALAAKGIILGFPDGTFRGNEN CCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCC LTRYQAALLIYRLLQQIEEELKTQGTSPTMEALAPEDLEALKNAVQELAAELASLGVRVS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEE ALEDSAATKEDIARLEAMIAELKAQPMPEPGMDQAALKDLMDRVEAASIAADTALAQAQQ ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LAERLDALAQDVEGVKGDLAGLRSQVEANADAIQALNELAVLLNQDVLSLQDRVTALEKM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSGGQELPDLEQFATKEDVAAVQEFAAALRSDLVGLSDKVSKLEEQVAELNKVRYSISGS HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCC LSATYGTVVTDTGTNFDIDRLFPGNAFSTGTYGSFSSSVQAGDSNQGNISGGSASLTFGV CEEEECEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE KVAQPGTSGVNVSEASATLQVPAAFGTAYTSAPTIRLNAASVKGNVDGQAFSVVYSRAVS EEECCCCCCCEEECCCCEEEECHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHH SFKFNDYLFANDNDSEPANPRQGMVATFSATKFPLAPEVTVVAGVAGPDATKDTAPALNG CCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC NYFGIRTAVKPFSALNLALNYATNLGNRSAIGVDGGLELGPAKLSGLWVSSQTPGSPFAD CEEEEHHHHCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCHHH FFDNTLSDWAYYAQAEAKLGPLSLSANYHAVDPQYADGQAGMSENEDTTYYGGEKAGAPY HHHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCC GADTRGLGVSASVGFGPVTLKGYAESEGDYNLAPGSVNDAWGVAATLGSFRGFSLTGFYN CCCCCCCCEEECCCCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEEEE AAYTGGNGYFSLTTAVDAIAPGVTYYYTIENQKYSSSWGVRVAHDGKAEDALIPTLNLTA EEEECCCCEEEHHHHHHHHCCCEEEEEEECCCEECCCCCEEEEECCCCCCCEECEEECEE QYATYYVSGHTDIQVYADLAKPFKLAILSLSPGFRYHSFAGAGSAPTYTTLKGGVQVSTD EEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEECCCEEECCC PLLFGLSLDGAVSYRRTQYTNNPSNVTTYELYYRAGVKLQDFLAPKLNFSVAYAHYEGDQ CEEEEEECCCCCCCHHHCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCEEEEEEEECCCC LAGTGLPVVGSGNQAFNFARDRVYRSPDPIAAPWLATPGTQAGKLDGFYIEAKYYDLTVA CCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE YGEFVLDDLNGTNPNFGRGFKISYTVKF ECHHHEECCCCCCCCCCCCEEEEEEEEC >Mature Secondary Structure MKKRLVTLLAGLLTVLSMGFGLAQFSDVPAGHWAKEAVEALAAKGIILGFPDGTFRGNEN CCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCC LTRYQAALLIYRLLQQIEEELKTQGTSPTMEALAPEDLEALKNAVQELAAELASLGVRVS HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEE ALEDSAATKEDIARLEAMIAELKAQPMPEPGMDQAALKDLMDRVEAASIAADTALAQAQQ ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LAERLDALAQDVEGVKGDLAGLRSQVEANADAIQALNELAVLLNQDVLSLQDRVTALEKM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSGGQELPDLEQFATKEDVAAVQEFAAALRSDLVGLSDKVSKLEEQVAELNKVRYSISGS HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECCC LSATYGTVVTDTGTNFDIDRLFPGNAFSTGTYGSFSSSVQAGDSNQGNISGGSASLTFGV CEEEECEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE KVAQPGTSGVNVSEASATLQVPAAFGTAYTSAPTIRLNAASVKGNVDGQAFSVVYSRAVS EEECCCCCCCEEECCCCEEEECHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHH SFKFNDYLFANDNDSEPANPRQGMVATFSATKFPLAPEVTVVAGVAGPDATKDTAPALNG CCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC NYFGIRTAVKPFSALNLALNYATNLGNRSAIGVDGGLELGPAKLSGLWVSSQTPGSPFAD CEEEEHHHHCCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCHHH FFDNTLSDWAYYAQAEAKLGPLSLSANYHAVDPQYADGQAGMSENEDTTYYGGEKAGAPY HHHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCC GADTRGLGVSASVGFGPVTLKGYAESEGDYNLAPGSVNDAWGVAATLGSFRGFSLTGFYN CCCCCCCCEEECCCCCCEEEEEEECCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEEEE AAYTGGNGYFSLTTAVDAIAPGVTYYYTIENQKYSSSWGVRVAHDGKAEDALIPTLNLTA EEEECCCCEEEHHHHHHHHCCCEEEEEEECCCEECCCCCEEEEECCCCCCCEECEEECEE QYATYYVSGHTDIQVYADLAKPFKLAILSLSPGFRYHSFAGAGSAPTYTTLKGGVQVSTD EEEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCEECCCCCCCCCCEEEECCCEEECCC PLLFGLSLDGAVSYRRTQYTNNPSNVTTYELYYRAGVKLQDFLAPKLNFSVAYAHYEGDQ CEEEEEECCCCCCCHHHCCCCCCCCCEEEEEEEECCCCHHHHHCCCCCEEEEEEEECCCC LAGTGLPVVGSGNQAFNFARDRVYRSPDPIAAPWLATPGTQAGKLDGFYIEAKYYDLTVA CCCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE YGEFVLDDLNGTNPNFGRGFKISYTVKF ECHHHEECCCCCCCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA