| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
Click here to switch to the map view.
The map label for this gene is 55981756
Identifier: 55981756
GI number: 55981756
Start: 1672360
End: 1673280
Strand: Direct
Name: 55981756
Synonym: TTHA1787
Alternate gene names: NA
Gene position: 1672360-1673280 (Clockwise)
Preceding gene: 55981755
Following gene: 55981760
Centisome position: 90.41
GC content: 73.83
Gene sequence:
>921_bases GTGGGCCCCGGCTTCCACCGGCTTTACGCCGACCGCCTGGCCTGGCGGTACCGCCTCCTCTTGGCCCTTGCCCTCGCCCT CCTCGGGGTCTTTCACCCCCTTTTCGCCCTCCTTTCCCCCTTAGGGCTTCTGCTCCCCGCACGGCTTTGGGAGGGGCGGG CCCTAAAGGAGATCTCCCGGGTGAGCCTGGCCTACGCCACCGCCTTGGCCTACGGGGAGGAACGGCTTTGGGCCGAGGCG GGCAAGGTTCCCGCGAGGCTTCCCCCCTTCCCTTGGGGCCTACTTCTGGCCTATGGGCTTGCCCTCCTTCTCGCCTTAGG GCTCCACCTGACAAGGCCCATCCCCCTCCCCAGCCCCGCCGGGGTGGAGAGGGTGGCCCCTCTATCCCGGGAAGGCCAGG CCCAAGACGGGGCCGCCGGGGAAAAGGAGGCCCAGGGCGAGGCGAAAGGCGAAGGGCAGGCCGCCCCTTCGCAGGGGAAG GCGCAAAGCCCCCCCTCGGAGGCCCCCGGGGAAGGCTCCCCCCAGGCCGAGGGCGCAAGCCCCGCCCAGCCCGAGGAGGG CTCCCCTGTCCGGGCCTTCCCCCGGACCGGAAGCCCGGGGGAGGAGGCCGGGCCTGCGGAAGCCCCCCCCAGGGAGGACG GAGGAGGCCAGGAAACGCCTCCGCCCCAGGCCTCGAGGCGGGGGCCCGGCGCGGGGGGTGCCCTGGAGGAGAAAGAGGGT GCCCTCCCCCCCACCCAGGCCCAAGGGCCGGAGGTGGGCCTCCTGGGCGAGGGGGAGGAAGGGGAAAAGGCCGCCCTCCC CTCCCCCTGGCCCGCAGGCCAGCCCCCGGAGGCGGTGCGCCGGGGGGTGGAGGTCTACCTGGAGAAGACCCCCCTGCCCC CCGAGGCCCGGGAGCTCCTCAGGCGCTACTTCGCTCCTTAA
Upstream 100 bases:
>100_bases CTCTGGGTGAAGGGGCAGCTCAGGAGCCCCTACACGGGCTCCCCCAGGCCCGTGGTGAACGCCCTGGCCCTCTACCTCCC CTAAGGGGGATAATGCCCTT
Downstream 100 bases:
>100_bases GGCGGGCCAGGGCCTCCTCCAGGGAGACCGGCCCCACCTCCACCCGGTCGGCCAGGGGGAAGGCCCCCAAAGACCCCTTG TGGCCGAAGCGGGCCCCCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 306; Mature: 305
Protein sequence:
>306_residues MGPGFHRLYADRLAWRYRLLLALALALLGVFHPLFALLSPLGLLLPARLWEGRALKEISRVSLAYATALAYGEERLWAEA GKVPARLPPFPWGLLLAYGLALLLALGLHLTRPIPLPSPAGVERVAPLSREGQAQDGAAGEKEAQGEAKGEGQAAPSQGK AQSPPSEAPGEGSPQAEGASPAQPEEGSPVRAFPRTGSPGEEAGPAEAPPREDGGGQETPPPQASRRGPGAGGALEEKEG ALPPTQAQGPEVGLLGEGEEGEKAALPSPWPAGQPPEAVRRGVEVYLEKTPLPPEARELLRRYFAP
Sequences:
>Translated_306_residues MGPGFHRLYADRLAWRYRLLLALALALLGVFHPLFALLSPLGLLLPARLWEGRALKEISRVSLAYATALAYGEERLWAEA GKVPARLPPFPWGLLLAYGLALLLALGLHLTRPIPLPSPAGVERVAPLSREGQAQDGAAGEKEAQGEAKGEGQAAPSQGK AQSPPSEAPGEGSPQAEGASPAQPEEGSPVRAFPRTGSPGEEAGPAEAPPREDGGGQETPPPQASRRGPGAGGALEEKEG ALPPTQAQGPEVGLLGEGEEGEKAALPSPWPAGQPPEAVRRGVEVYLEKTPLPPEARELLRRYFAP >Mature_305_residues GPGFHRLYADRLAWRYRLLLALALALLGVFHPLFALLSPLGLLLPARLWEGRALKEISRVSLAYATALAYGEERLWAEAG KVPARLPPFPWGLLLAYGLALLLALGLHLTRPIPLPSPAGVERVAPLSREGQAQDGAAGEKEAQGEAKGEGQAAPSQGKA QSPPSEAPGEGSPQAEGASPAQPEEGSPVRAFPRTGSPGEEAGPAEAPPREDGGGQETPPPQASRRGPGAGGALEEKEGA LPPTQAQGPEVGLLGEGEEGEKAALPSPWPAGQPPEAVRRGVEVYLEKTPLPPEARELLRRYFAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31991; Mature: 31859
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPGFHRLYADRLAWRYRLLLALALALLGVFHPLFALLSPLGLLLPARLWEGRALKEISR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH VSLAYATALAYGEERLWAEAGKVPARLPPFPWGLLLAYGLALLLALGLHLTRPIPLPSPA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVERVAPLSREGQAQDGAAGEKEAQGEAKGEGQAAPSQGKAQSPPSEAPGEGSPQAEGAS CHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAQPEEGSPVRAFPRTGSPGEEAGPAEAPPREDGGGQETPPPQASRRGPGAGGALEEKEG CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ALPPTQAQGPEVGLLGEGEEGEKAALPSPWPAGQPPEAVRRGVEVYLEKTPLPPEARELL CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH RRYFAP HHHCCC >Mature Secondary Structure GPGFHRLYADRLAWRYRLLLALALALLGVFHPLFALLSPLGLLLPARLWEGRALKEISR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH VSLAYATALAYGEERLWAEAGKVPARLPPFPWGLLLAYGLALLLALGLHLTRPIPLPSPA HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GVERVAPLSREGQAQDGAAGEKEAQGEAKGEGQAAPSQGKAQSPPSEAPGEGSPQAEGAS CHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAQPEEGSPVRAFPRTGSPGEEAGPAEAPPREDGGGQETPPPQASRRGPGAGGALEEKEG CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ALPPTQAQGPEVGLLGEGEEGEKAALPSPWPAGQPPEAVRRGVEVYLEKTPLPPEARELL CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH RRYFAP HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA