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The map label for this gene is rtcB [C]

Identifier: 55981754

GI number: 55981754

Start: 1669315

End: 1670745

Strand: Direct

Name: rtcB [C]

Synonym: TTHA1785

Alternate gene names: 55981754

Gene position: 1669315-1670745 (Clockwise)

Preceding gene: 55981741

Following gene: 55981755

Centisome position: 90.25

GC content: 66.95

Gene sequence:

>1431_bases
ATGTTCTTTGAGAAGATCGCCCCCTACACCTACCGCATCCCCCGGCAGGGGAAGATGCGGGTGGACGCCGTTTTCTTCGC
CTCAAAGGAGATCCTAAAGGACCTCGAGGCGGAAAACTACGCCTCCTTGCAGCAGCTCATGAACGTGGCCACCCTCCCGG
GCATCGTGGAGCCCGCCCTGGCCATGCCCGACATCCACTGGGGCTACGGCTTCCCCATCGGGGGAGTGGCGGCCTTTGAC
CCGGAGGAAGGAGGCGTGGTAAGCCCTGGCGGAGTCGGTTTTGACATCAACTGTGGGGTCCGCCTCCTCGCCTCCCACCT
CACCCTAGAAGACCTCCTCCCTCGCCAGAAGGAGCTCGCCGACGCCCTCTACCGCCTCGTCCCCTCGGGGGTGGGAAGCG
AAAGGAGGGACGTGCGCTTTAGCAAGCGGGAGCTCAAGGAGATCCTCAAGGAGGGGGCGGGCTGGCTCGTGAAGCGGGGG
TACGGCTACCCCGAGGACGTGCGCTTCATTGAGTCCCAAGGCCGTCTTCCCTGGGCCAACCCCGACAAGGTGTCGGAAAG
GGCCTTTGAGCGGGGGGCGCCCCAGATCGGCACCTTAGGAAGCGGGAACCACTTCCTCGAGGTGCAGTACGTGGACGAGG
TCTACGACGAGGAGGCGGCCCTAGCCTTCGGCCTCTTCAAGGGACAGGTCACCGTCCTCATCCACACGGGAAGCCGGGGC
CTCGGCCACCAGGTCTGCCAGGACTACGTGGAGCGCTTCCTCAAGGTGGCCCCCCGGTACGGCATTGAGCTCGTGGACAA
GCAGCTTGCCGCCGCCCCCATAAAGAGCCCCGAGGGCCAGGACTACCTCCAGGCCATGGCCGCCGCCGCCAACTTCGCCT
TCGCCAACCGCCAGCTCATCGCCCACTTCGTGCGGGAGGCCTTTGAGAAGGTGGGCTTCACCCCCAGGGACCACGGGCTC
AGGGTCCTCTACGACCTCGCCCACAACAACGCCAAGTTTGAAGAGCACAGGGGCAGGCGGGTCCTCGTCCACCGCAAGGG
GGCCACGCGGGCCTTCGGCCCCGGCCACCCGGAGGTCCCCGAGGAGTACCGCCGGGTGGGGCAGCCGGTCCTGGTGCCCG
GGGACATGGGCCGCTACTCCTACGTCCTCGCGGGGACGGAGAAAGCCATGGAGGTTTCCTTCGGGAGCAGCTGCCACGGG
GCCGGGCGCAAGATGAGCCGCCACCAGGCCAAAAAGGTGGCCCGGGAGCGGAACCTGGTGAAGGAGCTCGCGGAAAGGGG
CATCCTGGTGCGGGCCGCCACCCGGGCCACGGTGGACGAGGAGATGCCCGAGGCCTACAAGGACGTCTCCTTGGTGGTGG
AGGCGGTGGAGGGGGCGGGGATCGGGAAAAAGGTGGCCCGCCTCAGGCCCCTCATCGTGGTCAAGGGGTAA

Upstream 100 bases:

>100_bases
TTGCCCTCAGGCGCAAGCCTTGACGCATAACGCATACGAGGTTAGCTTAAGGGTAAGCCCGGGCCATATGGCCCGGACGT
TGTTTTTAGAGGAGGGCCCC

Downstream 100 bases:

>100_bases
TACCACCCCATGCTGGCTTGCGCCAGCATGGGGGCCCCGGCAAAGGGCTTCCTCGGGCTGGCTGGGCCACGGAAGCTCGG
CAAAAGGGTATAAGGCTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MFFEKIAPYTYRIPRQGKMRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPALAMPDIHWGYGFPIGGVAAFD
PEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRG
YGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFKGQVTVLIHTGSRG
LGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKVGFTPRDHGL
RVLYDLAHNNAKFEEHRGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQPVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHG
AGRKMSRHQAKKVARERNLVKELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG

Sequences:

>Translated_476_residues
MFFEKIAPYTYRIPRQGKMRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPALAMPDIHWGYGFPIGGVAAFD
PEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRG
YGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFKGQVTVLIHTGSRG
LGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKVGFTPRDHGL
RVLYDLAHNNAKFEEHRGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQPVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHG
AGRKMSRHQAKKVARERNLVKELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG
>Mature_476_residues
MFFEKIAPYTYRIPRQGKMRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPALAMPDIHWGYGFPIGGVAAFD
PEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELADALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRG
YGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFKGQVTVLIHTGSRG
LGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKVGFTPRDHGL
RVLYDLAHNNAKFEEHRGRRVLVHRKGATRAFGPGHPEVPEEYRRVGQPVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHG
AGRKMSRHQAKKVARERNLVKELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=498, Percent_Identity=46.7871485943775, Blast_Score=433, Evalue=1e-121,
Organism=Escherichia coli, GI2367224, Length=447, Percent_Identity=30.6487695749441, Blast_Score=157, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17506665, Length=444, Percent_Identity=48.6486486486487, Blast_Score=421, Evalue=1e-118,
Organism=Drosophila melanogaster, GI24585217, Length=496, Percent_Identity=46.7741935483871, Blast_Score=419, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52709; Mature: 52709

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFEKIAPYTYRIPRQGKMRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPAL
CCCHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
AMPDIHWGYGFPIGGVAAFDPEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELA
HCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCEECCCCHHHHHHHHHHHHHCCHHHHHH
DALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWAN
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCC
PDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFKGQVTVLIHTGSRG
CHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHEEECCEEEEEEECCCCC
LGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AHFVREAFEKVGFTPRDHGLRVLYDLAHNNAKFEEHRGRRVLVHRKGATRAFGPGHPEVP
HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCC
EEYRRVGQPVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLV
HHHHHCCCCEEECCCCCCEEEEEECCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
KELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG
HHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEECC
>Mature Secondary Structure
MFFEKIAPYTYRIPRQGKMRVDAVFFASKEILKDLEAENYASLQQLMNVATLPGIVEPAL
CCCHHHCCCEEECCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
AMPDIHWGYGFPIGGVAAFDPEEGGVVSPGGVGFDINCGVRLLASHLTLEDLLPRQKELA
HCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCEECCCCHHHHHHHHHHHHHCCHHHHHH
DALYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWAN
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCC
PDKVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFKGQVTVLIHTGSRG
CHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCHHHHHHEEECCEEEEEEECCCCC
LGHQVCQDYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMAAAANFAFANRQLI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
AHFVREAFEKVGFTPRDHGLRVLYDLAHNNAKFEEHRGRRVLVHRKGATRAFGPGHPEVP
HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHCCCEEEEEECCCCCCCCCCCCCCC
EEYRRVGQPVLVPGDMGRYSYVLAGTEKAMEVSFGSSCHGAGRKMSRHQAKKVARERNLV
HHHHHCCCCEEECCCCCCEEEEEECCCHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
KELAERGILVRAATRATVDEEMPEAYKDVSLVVEAVEGAGIGKKVARLRPLIVVKG
HHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]