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The map label for this gene is (hspc4-1 [H]

Identifier: 55981449

GI number: 55981449

Start: 1408739

End: 1409152

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: TTHA1480

Alternate gene names: 55981449

Gene position: 1409152-1408739 (Counterclockwise)

Preceding gene: 55981450

Following gene: 55981448

Centisome position: 76.18

GC content: 64.49

Gene sequence:

>414_bases
ATGTTGGAGAAGCTTTGGCCTTTTGGCCGCTCCCGCGTGCGCAAGGCGGTGGAGGAAGCCCTGGAGAAGGCTTTCCAGGA
CGTAGGCGAGGTTTTGGAACCCCTTTCCGAGCTTTCCGAGCACGAGGACCACTACCTCCTTAGGGTGGAGGTGCCGGGGC
TTGGCCCGGAGAACCTGGAGGTGCGCCTCGAGGGGGACCAGCTGGTCATTGAGGGGGAGAAGCGGGAGGAGAAGCGCGCC
AAGCACCTCGCCGAGATCGTCTACGGCCGGATCTACCGGGCCTACCTCCTCCCCAAGGACGCCAAGAAGGAGGGGATTGA
GGCGAGGCTCGCCAAGGGGGTGCTGGAGGTGCGGATCCCCCGGGAGAAGCGGCCCGAGGAACCTCCCGTGCGGATACCCA
TTCAGGAAAGCTAA

Upstream 100 bases:

>100_bases
CCTCTTCCGCCGGGGTGCGCCCGTGGCCACCTGGGTGGGCGCGAGCCCCAGGCGGGTTCTGGAGGAAAGGCTCAGGCCCT
ACCTAGAAGGGAGGTGAACC

Downstream 100 bases:

>100_bases
AATCTAGCTGCTGAGAATACTTGACATAGATTGGCGCAATTGTTAGCCTGTTCCCCGGAGGTGGCCCATGTTGATGAAGG
TGGCCGAGTTTGAAAGGCTC

Product: heat shock protein 20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MLEKLWPFGRSRVRKAVEEALEKAFQDVGEVLEPLSELSEHEDHYLLRVEVPGLGPENLEVRLEGDQLVIEGEKREEKRA
KHLAEIVYGRIYRAYLLPKDAKKEGIEARLAKGVLEVRIPREKRPEEPPVRIPIQES

Sequences:

>Translated_137_residues
MLEKLWPFGRSRVRKAVEEALEKAFQDVGEVLEPLSELSEHEDHYLLRVEVPGLGPENLEVRLEGDQLVIEGEKREEKRA
KHLAEIVYGRIYRAYLLPKDAKKEGIEARLAKGVLEVRIPREKRPEEPPVRIPIQES
>Mature_137_residues
MLEKLWPFGRSRVRKAVEEALEKAFQDVGEVLEPLSELSEHEDHYLLRVEVPGLGPENLEVRLEGDQLVIEGEKREEKRA
KHLAEIVYGRIYRAYLLPKDAKKEGIEARLAKGVLEVRIPREKRPEEPPVRIPIQES

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 15855; Mature: 15855

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKLWPFGRSRVRKAVEEALEKAFQDVGEVLEPLSELSEHEDHYLLRVEVPGLGPENLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEE
VRLEGDQLVIEGEKREEKRAKHLAEIVYGRIYRAYLLPKDAKKEGIEARLAKGVLEVRIP
EEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC
REKRPEEPPVRIPIQES
HHCCCCCCCEECCCCCC
>Mature Secondary Structure
MLEKLWPFGRSRVRKAVEEALEKAFQDVGEVLEPLSELSEHEDHYLLRVEVPGLGPENLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEE
VRLEGDQLVIEGEKREEKRAKHLAEIVYGRIYRAYLLPKDAKKEGIEARLAKGVLEVRIP
EEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC
REKRPEEPPVRIPIQES
HHCCCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA