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The map label for this gene is atpD

Identifier: 55981240

GI number: 55981240

Start: 1212733

End: 1213404

Strand: Reverse

Name: atpD

Synonym: TTHA1271

Alternate gene names: 55981240

Gene position: 1213404-1212733 (Counterclockwise)

Preceding gene: 55981241

Following gene: 55981239

Centisome position: 65.6

GC content: 70.54

Gene sequence:

>672_bases
ATGAGCCAGGTGAGCCCCACCCGGATGAACCTTCTGCAGAGGCGGGGGCAGCTCCGCCTGGCGCAGAAGGGGGTGGACCT
CCTCAAGAAGAAGCGGGACGCCCTGGTGGCCGAGTTCTTCGGCCTGGTGCGGGAGGCCATGGAGGCCAGGAAGGCCCTGG
ACCAGGCGGCCAAGGAGGCCTACGCCGCCCTCCTCCTGGCCCAGGCCTTTGACGGGCCGGAGGTGGTGGCGGGGGCGGCC
CTTGGGGTCCCGCCCCTCGAGGGGGTGGAGGCGGAGGTGGAGAACGTCTGGGGGAGCAAGGTGCCGAGGCTCAAGGCCAC
CTTCCCCGACGGGGCCCTCCTTTCCCCGGTGGGGACCCCGGCCTACACCCTCGAGGCCAGCCGGGCCTTCCGCCGCTACG
CCGAGGCCCTGATCCGGGTGGCCAACACCGAGACCCGCCTGAAGAAGATCGGGGAGGAGATCAAGAAGACCACGCGGCGG
GTGAACGCCCTGGAGCAGGTGGTGATCCCGGGGATCCGCGCCCAGATCCGCTTCATCCAGCAGGTCCTGGAGCAGCGGGA
ACGGGAGGACACCTTCCGCCTCAAGCGCATCAAGGGCAAGATTGAGGCCCGGGAGGCCGAGGAGGAGGGCGGCCGGCCCA
ACCCGCAGGTGGAGATCGGGGCGGGCCTTTAA

Upstream 100 bases:

>100_bases
GAGCTCAAGCGCATCTCCAAGGACCACATCGGCAAGTACTACGGCCAGAAGCTGGAGGAGATCTGGGGCGCGCCCCAGGC
CCTGGACTAAGGGAGGGTAG

Downstream 100 bases:

>100_bases
GCCCCCTAGAGGGGCCCGGGGGGTTCAGGCCCCCCGGGCTTTTTCTTGACCCGGTGCAAGGCCCTGCGGTAGCTTGGCTG
TGGAGGGTACAAATGAAGCG

Product: V-type ATP synthase subunit D

Products: NA

Alternate protein names: V-ATPase subunit D

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA
LGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRR
VNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL

Sequences:

>Translated_223_residues
MSQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA
LGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRR
VNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL
>Mature_222_residues
SQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAAL
GVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRV
NALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG1394

COG function: function code C; Archaeal/vacuolar-type H+-ATPase subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the V-ATPase D subunit family

Homologues:

Organism=Homo sapiens, GI7706757, Length=211, Percent_Identity=31.2796208530806, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17553636, Length=211, Percent_Identity=33.6492890995261, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6320784, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355551, Length=203, Percent_Identity=29.5566502463054, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI20128937, Length=213, Percent_Identity=30.5164319248826, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI20129907, Length=211, Percent_Identity=29.3838862559242, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VATD_THET2 (Q72J74)

Other databases:

- EMBL:   AE017221
- RefSeq:   YP_004876.1
- STRING:   Q72J74
- GeneID:   2774743
- GenomeReviews:   AE017221_GR
- eggNOG:   COG1394
- HOGENOM:   HBG732046
- OMA:   INVGART
- PhylomeDB:   Q72J74
- ProtClustDB:   CLSK444671
- BioCyc:   TTHE262724:TT_C0905-MONOMER
- HAMAP:   MF_00271
- InterPro:   IPR002699
- PANTHER:   PTHR11671
- TIGRFAMs:   TIGR00309

Pfam domain/function: PF01813 ATP-synt_D

EC number: NA

Molecular weight: Translated: 24678; Mature: 24547

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAALLLAQAFDGPEVVAGAALGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTP
HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCEECCCCCC
AYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQ
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
>Mature Secondary Structure 
SQVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAALLLAQAFDGPEVVAGAALGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTP
HHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCEECCCCCC
AYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQ
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
QVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA