| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is 55981189
Identifier: 55981189
GI number: 55981189
Start: 1159547
End: 1161046
Strand: Direct
Name: 55981189
Synonym: TTHA1220
Alternate gene names: NA
Gene position: 1159547-1161046 (Clockwise)
Preceding gene: 55981188
Following gene: 55981190
Centisome position: 62.69
GC content: 65.2
Gene sequence:
>1500_bases ATGAACCGGAAAGGCATAGCAGTGGTGGTGGCCCTCATCGGGATGACGGTGATCCTCATGCTCTCCCTGGCCATGGTGCA AAGCGCCCTAGGCAACCTTAAGACCGGGAGCGACCTCCTGAACCGGGCCCAGGCCCGCCAGCGGGCGGAGGCGGGCGTGG ACCACGCCCTGGCTTACCTTGACGGCAAGACGGCCTTAAGCGCCCCCAAAACCCTCTCCGGCCAAGGCTACCAGGTCACC CTCACCCCCCAGAACCCCCAGGGAGATGAGATCCGGATAGAAAGCCAGGGGCAGATGGGCCTCGCCCGGCACACCGCCGT GGCCGTGGTGCGCCTCCAGCCCGTTCCCGCCCAGGCGCAAAACCCCCTGTTTGGCCAGGGATGGATCAGCGGCGGGCGCA TCACCATCAACGGGGGGGTGGACCTGTGGGGAAGCCGGCTCCACGCCGACCAAGGCTACGCCAACCTCTCGGGCCAAATC GGGGTTTGCGACAGCTCAGGTCAAAACTGCAAAAACCTTAACCAGGTCAACCCACCGCCCATCACGGGAGGGCAAGGGGT CACGGACACCCAGTGCAACGCGAGCGGGAACAACAAGGTGGTCTGCGATGGTTCCGCGCCCAAGTATAAGGTCTGCCCGG TGTATCAGACCCCCTCCGACCCCAACCTCACGTGCCTGGACGCCGTCACAGGTAGGCAAGTGCGATGGGACCAGGCCACC CGCATTCGCAAGCCCGACGTGGACGCGATCAGCAAGGACCGCCTTGGGGTCAGGGCCAGCAGCCCCTACACCGACGCCAC CACGAATCGCCTCTGCGACGTCCGCTTCACCAGCCTAGACCCAGGAAACGCTGGCGAGCTCACGCAGTTCCTCCTGAGTA GGGGCATCTCCGGGAGCTTCCCTCAGGACGTCAACCAGCTCCTTCCCCTAGTGCTCAACGCCCTGAACGGGAGTGGGCTC AGGGTGTGCGTTCAGAATAACGTTACTCTTCCAGGTGGCACTTCTTTGGGCAACGTTACCTTCTACGTGGGCGGCACCTT CCAGGTCAACGGGACTGTCACCCTCAACGGGGTGAGCGTGGCCGCCGGGTCGGGCATCAACCTCGGGGACCTCCAGACCA CGGACAGCCGCTTCTACACAGGGGGAACCCTCAACCTGAACAACGGCGCCACCTTCCGGGGCGACTCTACCCTCGCCTCC CGGCAGTCCCTTACCTTCAACGGCCGGGCCGACCTGCTGAATAACCGCGCCCTCCTGGTGGTGAGCGAGGGGGACATCAC CTTCAACGGCCGGGCGGACACCCACGCCTTCCTGTGGGCGGGAGGGACCATCACCTTCAACGGCACCGGGGCCTTTATCG GCGGGGCGGTGAGCCTCGGGGGCACCATCCGAAACGGCGGGGGCCAGTTCTACATCCAAAACTCCAACGCCCTCAACAGC GACCTGCCCAACACAGAGACTGGCACCCGGCCCCGGCCCGTGGTCCTGAGCCGGAGGTAA
Upstream 100 bases:
>100_bases CTTCTGGAACTTCCCGGTGCGCCAAACGACGGACGTTTGCGGGCCGAGAAGCTCTGGATCGTCCAGACCCCCAACCTGGC CCGCTGAAGGGAGGAACGGG
Downstream 100 bases:
>100_bases TCCTTAGCCCAAGCCCGCTCCAGGCGGCGGGGTGGGTCCGGCTTTCACACCGTTTTCACACCCCTCCCCCATCCTGAAGT TGACTCCCCCAAAAGGGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 499
Protein sequence:
>499_residues MNRKGIAVVVALIGMTVILMLSLAMVQSALGNLKTGSDLLNRAQARQRAEAGVDHALAYLDGKTALSAPKTLSGQGYQVT LTPQNPQGDEIRIESQGQMGLARHTAVAVVRLQPVPAQAQNPLFGQGWISGGRITINGGVDLWGSRLHADQGYANLSGQI GVCDSSGQNCKNLNQVNPPPITGGQGVTDTQCNASGNNKVVCDGSAPKYKVCPVYQTPSDPNLTCLDAVTGRQVRWDQAT RIRKPDVDAISKDRLGVRASSPYTDATTNRLCDVRFTSLDPGNAGELTQFLLSRGISGSFPQDVNQLLPLVLNALNGSGL RVCVQNNVTLPGGTSLGNVTFYVGGTFQVNGTVTLNGVSVAAGSGINLGDLQTTDSRFYTGGTLNLNNGATFRGDSTLAS RQSLTFNGRADLLNNRALLVVSEGDITFNGRADTHAFLWAGGTITFNGTGAFIGGAVSLGGTIRNGGGQFYIQNSNALNS DLPNTETGTRPRPVVLSRR
Sequences:
>Translated_499_residues MNRKGIAVVVALIGMTVILMLSLAMVQSALGNLKTGSDLLNRAQARQRAEAGVDHALAYLDGKTALSAPKTLSGQGYQVT LTPQNPQGDEIRIESQGQMGLARHTAVAVVRLQPVPAQAQNPLFGQGWISGGRITINGGVDLWGSRLHADQGYANLSGQI GVCDSSGQNCKNLNQVNPPPITGGQGVTDTQCNASGNNKVVCDGSAPKYKVCPVYQTPSDPNLTCLDAVTGRQVRWDQAT RIRKPDVDAISKDRLGVRASSPYTDATTNRLCDVRFTSLDPGNAGELTQFLLSRGISGSFPQDVNQLLPLVLNALNGSGL RVCVQNNVTLPGGTSLGNVTFYVGGTFQVNGTVTLNGVSVAAGSGINLGDLQTTDSRFYTGGTLNLNNGATFRGDSTLAS RQSLTFNGRADLLNNRALLVVSEGDITFNGRADTHAFLWAGGTITFNGTGAFIGGAVSLGGTIRNGGGQFYIQNSNALNS DLPNTETGTRPRPVVLSRR >Mature_499_residues MNRKGIAVVVALIGMTVILMLSLAMVQSALGNLKTGSDLLNRAQARQRAEAGVDHALAYLDGKTALSAPKTLSGQGYQVT LTPQNPQGDEIRIESQGQMGLARHTAVAVVRLQPVPAQAQNPLFGQGWISGGRITINGGVDLWGSRLHADQGYANLSGQI GVCDSSGQNCKNLNQVNPPPITGGQGVTDTQCNASGNNKVVCDGSAPKYKVCPVYQTPSDPNLTCLDAVTGRQVRWDQAT RIRKPDVDAISKDRLGVRASSPYTDATTNRLCDVRFTSLDPGNAGELTQFLLSRGISGSFPQDVNQLLPLVLNALNGSGL RVCVQNNVTLPGGTSLGNVTFYVGGTFQVNGTVTLNGVSVAAGSGINLGDLQTTDSRFYTGGTLNLNNGATFRGDSTLAS RQSLTFNGRADLLNNRALLVVSEGDITFNGRADTHAFLWAGGTITFNGTGAFIGGAVSLGGTIRNGGGQFYIQNSNALNS DLPNTETGTRPRPVVLSRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52316; Mature: 52316
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRKGIAVVVALIGMTVILMLSLAMVQSALGNLKTGSDLLNRAQARQRAEAGVDHALAYL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHEEEEE DGKTALSAPKTLSGQGYQVTLTPQNPQGDEIRIESQGQMGLARHTAVAVVRLQPVPAQAQ CCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEEEEEECCCCCCC NPLFGQGWISGGRITINGGVDLWGSRLHADQGYANLSGQIGVCDSSGQNCKNLNQVNPPP CCCCCCCEECCCEEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC ITGGQGVTDTQCNASGNNKVVCDGSAPKYKVCPVYQTPSDPNLTCLDAVTGRQVRWDQAT CCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCHHH RIRKPDVDAISKDRLGVRASSPYTDATTNRLCDVRFTSLDPGNAGELTQFLLSRGISGSF CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCC PQDVNQLLPLVLNALNGSGLRVCVQNNVTLPGGTSLGNVTFYVGGTFQVNGTVTLNGVSV HHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCCCCEEEEECCEEEECCEEEECCEEE AAGSGINLGDLQTTDSRFYTGGTLNLNNGATFRGDSTLASRQSLTFNGRADLLNNRALLV ECCCCCCCCCCCCCCCEEEECCEEECCCCCEECCCCCHHCCCEEEECCCHHHCCCCEEEE VSEGDITFNGRADTHAFLWAGGTITFNGTGAFIGGAVSLGGTIRNGGGQFYIQNSNALNS EECCCEEECCCCCCEEEEEECCEEEECCCCCEECCEEEECCEEECCCCEEEEECCCCCCC DLPNTETGTRPRPVVLSRR CCCCCCCCCCCCCEEECCC >Mature Secondary Structure MNRKGIAVVVALIGMTVILMLSLAMVQSALGNLKTGSDLLNRAQARQRAEAGVDHALAYL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHEEEEE DGKTALSAPKTLSGQGYQVTLTPQNPQGDEIRIESQGQMGLARHTAVAVVRLQPVPAQAQ CCCHHCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEEEEEECCCCCCC NPLFGQGWISGGRITINGGVDLWGSRLHADQGYANLSGQIGVCDSSGQNCKNLNQVNPPP CCCCCCCEECCCEEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC ITGGQGVTDTQCNASGNNKVVCDGSAPKYKVCPVYQTPSDPNLTCLDAVTGRQVRWDQAT CCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCHHH RIRKPDVDAISKDRLGVRASSPYTDATTNRLCDVRFTSLDPGNAGELTQFLLSRGISGSF CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCC PQDVNQLLPLVLNALNGSGLRVCVQNNVTLPGGTSLGNVTFYVGGTFQVNGTVTLNGVSV HHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCCCCEEEEECCEEEECCEEEECCEEE AAGSGINLGDLQTTDSRFYTGGTLNLNNGATFRGDSTLASRQSLTFNGRADLLNNRALLV ECCCCCCCCCCCCCCCEEEECCEEECCCCCEECCCCCHHCCCEEEECCCHHHCCCCEEEE VSEGDITFNGRADTHAFLWAGGTITFNGTGAFIGGAVSLGGTIRNGGGQFYIQNSNALNS EECCCEEECCCCCCEEEEEECCEEEECCCCCEECCEEEECCEEECCCCEEEEECCCCCCC DLPNTETGTRPRPVVLSRR CCCCCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA