Click here to switch to the map view.

The map label for this gene is ylbH [H]

Identifier: 55980897

GI number: 55980897

Start: 878529

End: 879086

Strand: Direct

Name: ylbH [H]

Synonym: TTHA0928

Alternate gene names: 55980897

Gene position: 878529-879086 (Clockwise)

Preceding gene: 55980895

Following gene: 55980898

Centisome position: 47.49

GC content: 72.04

Gene sequence:

>558_bases
GTGGGGTTTGCGAAGCCTCCTTGGGGCGGTAAGCTGAAGGGCGTGGTGCGGATCCTGGGCGGCAAGGCCCGGGGCGTGGC
CTTGAAGGTGCCCGCCTCGGCCCGTCCCTCCCCGGTGCGGCTGAGGAAGGCCCTCTTTGACTACCTCCGCCTCCGCTACC
CGCGGCGGGGGCGCTTCCTGGACCTCTTCGCGGGGAGCGGGGCCGTGGGCCTCGAGGCCGCCAGCGAGGGTTGGGAGGCG
GTGCTGGTGGAGAAGGACCCCGAGGCGGTCCGGCTCCTCAAGGAGAACGTGCGCCGCACGGGCCTCGGGGCCCGGGTGGT
GGCCCTCCCGGTGGAGGTCTTCCTCCCCGAGGCCAAGGCCCAGGGGGAGCGGTTCACCGTGGCCTTCATGGCCCCGCCGT
ACGCCATGGACCTCGCCGCCCTCTTCGGCGAGCTTCTCGCAAGCGGCCTGGTGGAGGCGGGGGGGCTTTACGTCCTCCAG
CACCCTAAGGACCTCTACCTCCCCTTAGGGGAGCGGCGGGTCTACGGGGAGAACGCCCTCACCCTGGTGGAGGTCTAG

Upstream 100 bases:

>100_bases
GCAGCCCGGTAGCGCACCTCGTTCGGGACGAGGGGGTCGCTGGTTCAAATCCAGTCTCCCCGACCAAGGGCCGGCCCACG
GGCCGGCTTCCTTCTTTCGG

Downstream 100 bases:

>100_bases
ATGCACGTGGTCTACCCTGGGAGCTTTGACCCCCTGACCAACGGCCACCTGGACGTGATCCAGCGGGCGAGCCGGCTCTT
TGAGAAGGTGACCGTGGCCG

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MGFAKPPWGGKLKGVVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDLFAGSGAVGLEAASEGWEA
VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ
HPKDLYLPLGERRVYGENALTLVEV

Sequences:

>Translated_185_residues
MGFAKPPWGGKLKGVVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDLFAGSGAVGLEAASEGWEA
VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ
HPKDLYLPLGERRVYGENALTLVEV
>Mature_184_residues
GFAKPPWGGKLKGVVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFLDLFAGSGAVGLEAASEGWEAV
LVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQH
PKDLYLPLGERRVYGENALTLVEV

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20052; Mature: 19921

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFAKPPWGGKLKGVVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFL
CCCCCCCCCCCHHHHHHEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
DLFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA
EEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCC
QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLPLGERRVYGENAL
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCEEEECCCCE
TLVEV
EEEEC
>Mature Secondary Structure 
GFAKPPWGGKLKGVVRILGGKARGVALKVPASARPSPVRLRKALFDYLRLRYPRRGRFL
CCCCCCCCCCHHHHHHEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
DLFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA
EEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCC
QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYLPLGERRVYGENAL
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCEEEECCCCE
TLVEV
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]