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The map label for this gene is glcD [H]

Identifier: 55980474

GI number: 55980474

Start: 469140

End: 470522

Strand: Reverse

Name: glcD [H]

Synonym: TTHA0505

Alternate gene names: 55980474

Gene position: 470522-469140 (Counterclockwise)

Preceding gene: 55980475

Following gene: 55980473

Centisome position: 25.44

GC content: 70.5

Gene sequence:

>1383_bases
GTGGGCTTCTTGGAGGAACTCAAGGCCCTGCTTCCCGGCCGGGTCCTCACGAGGGAGGCGGAGCTCGCCCCCTACGAGTC
CGACGCCCTCACCGCCTACCGCAAAAGGCCCTTGGCGGTGGCCCTCCCGGAGAGGAAGGAGGAGGTCATCGGGGTGGTGC
GGCTTTGCCACCAATACGGCGTCCCCTTCGTGGCCCGGGGGAGCGGCACAAGCCTCTCCGGGGGCTCCCTCCCCGTGGAG
GGCGGGGTGGTGATCGCCCTGAACCGGATGAACCGGATCCTGAGGCTGGACCCCAAGGCCAGGATCGCCGTGGTGGAGCC
CGGGGTGGTGAACCTCAAGGTCTCCCAGGAGGCCGCCCCCTTCGGCCTCTACTACGCCCCGGACCCCTCCAGCCAGCCCG
TAAGCACCATCGGGGGAAACGTGGCCTTCAACTCCGGGGGGGCCCACTGCCTGAAGTACGGGATGACGGCGAACCACGTC
CTGGGCCTCGAGGTCGTCACCCCCACGGGGGAGGTGGTGCGCTTAGGGGGGGAAAGCCTGGAGGGCGTGGGCCCGGACCT
CCACGGCTTCTTCGTGGGGACGGAGGGGCTTTTGGGGGTGGCGGTGGAGATCACCTTGAGGCTTCTCCCCAGGCCCGAGG
CCTACCACACCGTCCTCGCCGCCTACCCGAGCCTCGAGGCGGCGGGGGAGGCGGTGAGCCGGGTGATCCGGGCGGGGCTT
CTCCCCGGGGCCATGGAGATCATGGACCGCCTGAGCATAGAGGCGGCGGAGAAGGCGGTGAGGGCCGGCTACCCCCTGGT
GGAGGGCCTCCTCATCGTGGAGCTGGAGGGCCCTAAGGAGGAGGTGGCCGAGGAGGCCCTGGTCCTGGAAAGGGTCCTCA
GGGAAAGCGGCGCCCTGGAGCTCAGGGTGGCGGGCAGCGAGGCCGAGCGCCAGGCCATCTGGAAGGGCCGCAAGGCCGCC
TTCAGCGCCGTGGGGAGGCTTTCCCCCGACTACCTGGTCCAAGACGGGGTGGTGCCCCGCTCCCGGCTCGGGGAGGCCTT
GAAGGAGATCCAGCGCCTCTCCCGGGAGTACGGCCTGAGGGTGGCCAACGTCTTCCACGCCGGGGACGGGAACCTCCACC
CCCTGGTCCTCTACGACGGGAAGAAGCCCGGGGAGCTGGAACGGGCCGAGGCCCTGGCCGGGGAGATCCTGAGGCTTTGC
GTGCGCCTGGGAGGGTCCCTCACGGGGGAGCACGGCATCGGGGTGGAGAAGAAGGGCTACATGCCGGAGATGTTCGCCCC
GGAGGACCTCCTGGCCATGGAGGAGGTGAAGCGGGCCCTGGACCCCAAGGGCCTCGCCAACCGGGGCAAGGTCCTGCCGG
AGGTGGCCGGTGCCCACGCTTAG

Upstream 100 bases:

>100_bases
GAGTTCCTGACCCTGGTGGCCTACGACTACATTGACTGAGCCCCTCGCCGCGGTGGGGGCCCCCCTTTTGCCCTAAAGTG
GAGGGGAAAGGAGGTCAAGG

Downstream 100 bases:

>100_bases
GCCGGAAAGCCCGGAAGAGGTCCAGGAGGCGGTGCGGGCCTACCCCCGGCTCCGGGCGCAAGGCGGGGGGACGAAGCCCG
CCCTCTCCACCCCCAAAGAG

Product: glycolate oxidase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MGFLEELKALLPGRVLTREAELAPYESDALTAYRKRPLAVALPERKEEVIGVVRLCHQYGVPFVARGSGTSLSGGSLPVE
GGVVIALNRMNRILRLDPKARIAVVEPGVVNLKVSQEAAPFGLYYAPDPSSQPVSTIGGNVAFNSGGAHCLKYGMTANHV
LGLEVVTPTGEVVRLGGESLEGVGPDLHGFFVGTEGLLGVAVEITLRLLPRPEAYHTVLAAYPSLEAAGEAVSRVIRAGL
LPGAMEIMDRLSIEAAEKAVRAGYPLVEGLLIVELEGPKEEVAEEALVLERVLRESGALELRVAGSEAERQAIWKGRKAA
FSAVGRLSPDYLVQDGVVPRSRLGEALKEIQRLSREYGLRVANVFHAGDGNLHPLVLYDGKKPGELERAEALAGEILRLC
VRLGGSLTGEHGIGVEKKGYMPEMFAPEDLLAMEEVKRALDPKGLANRGKVLPEVAGAHA

Sequences:

>Translated_460_residues
MGFLEELKALLPGRVLTREAELAPYESDALTAYRKRPLAVALPERKEEVIGVVRLCHQYGVPFVARGSGTSLSGGSLPVE
GGVVIALNRMNRILRLDPKARIAVVEPGVVNLKVSQEAAPFGLYYAPDPSSQPVSTIGGNVAFNSGGAHCLKYGMTANHV
LGLEVVTPTGEVVRLGGESLEGVGPDLHGFFVGTEGLLGVAVEITLRLLPRPEAYHTVLAAYPSLEAAGEAVSRVIRAGL
LPGAMEIMDRLSIEAAEKAVRAGYPLVEGLLIVELEGPKEEVAEEALVLERVLRESGALELRVAGSEAERQAIWKGRKAA
FSAVGRLSPDYLVQDGVVPRSRLGEALKEIQRLSREYGLRVANVFHAGDGNLHPLVLYDGKKPGELERAEALAGEILRLC
VRLGGSLTGEHGIGVEKKGYMPEMFAPEDLLAMEEVKRALDPKGLANRGKVLPEVAGAHA
>Mature_459_residues
GFLEELKALLPGRVLTREAELAPYESDALTAYRKRPLAVALPERKEEVIGVVRLCHQYGVPFVARGSGTSLSGGSLPVEG
GVVIALNRMNRILRLDPKARIAVVEPGVVNLKVSQEAAPFGLYYAPDPSSQPVSTIGGNVAFNSGGAHCLKYGMTANHVL
GLEVVTPTGEVVRLGGESLEGVGPDLHGFFVGTEGLLGVAVEITLRLLPRPEAYHTVLAAYPSLEAAGEAVSRVIRAGLL
PGAMEIMDRLSIEAAEKAVRAGYPLVEGLLIVELEGPKEEVAEEALVLERVLRESGALELRVAGSEAERQAIWKGRKAAF
SAVGRLSPDYLVQDGVVPRSRLGEALKEIQRLSREYGLRVANVFHAGDGNLHPLVLYDGKKPGELERAEALAGEILRLCV
RLGGSLTGEHGIGVEKKGYMPEMFAPEDLLAMEEVKRALDPKGLANRGKVLPEVAGAHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=457, Percent_Identity=32.6039387308534, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI37595754, Length=480, Percent_Identity=31.4583333333333, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI119964728, Length=459, Percent_Identity=28.1045751633987, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI4501993, Length=468, Percent_Identity=23.0769230769231, Blast_Score=105, Evalue=7e-23,
Organism=Escherichia coli, GI1789351, Length=452, Percent_Identity=50.4424778761062, Blast_Score=455, Evalue=1e-129,
Organism=Escherichia coli, GI1787977, Length=538, Percent_Identity=25.4646840148699, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI48994907, Length=492, Percent_Identity=24.1869918699187, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI48994914, Length=322, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992373, Length=427, Percent_Identity=28.1030444964871, Blast_Score=192, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI71992381, Length=429, Percent_Identity=26.8065268065268, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI71992392, Length=385, Percent_Identity=27.2727272727273, Blast_Score=163, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17534361, Length=452, Percent_Identity=27.6548672566372, Blast_Score=154, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17556096, Length=471, Percent_Identity=22.0806794055202, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320027, Length=473, Percent_Identity=27.2727272727273, Blast_Score=178, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6320023, Length=480, Percent_Identity=26.25, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6320764, Length=466, Percent_Identity=26.3948497854077, Blast_Score=144, Evalue=2e-35,
Organism=Drosophila melanogaster, GI18921117, Length=460, Percent_Identity=26.9565217391304, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24639277, Length=460, Percent_Identity=26.9565217391304, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24639275, Length=460, Percent_Identity=26.9565217391304, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI24653753, Length=470, Percent_Identity=25.3191489361702, Blast_Score=104, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 49045; Mature: 48914

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFLEELKALLPGRVLTREAELAPYESDALTAYRKRPLAVALPERKEEVIGVVRLCHQYG
CCHHHHHHHHCCCHHEECCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHC
VPFVARGSGTSLSGGSLPVEGGVVIALNRMNRILRLDPKARIAVVEPGVVNLKVSQEAAP
CCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHEEECCCCEEEEECCCEEEEEECCCCCC
FGLYYAPDPSSQPVSTIGGNVAFNSGGAHCLKYGMTANHVLGLEVVTPTGEVVRLGGESL
EEEEECCCCCCCCHHHCCCCEEECCCCHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCC
EGVGPDLHGFFVGTEGLLGVAVEITLRLLPRPEAYHTVLAAYPSLEAAGEAVSRVIRAGL
CCCCCCCCEEEECCCCHHHEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LPGAMEIMDRLSIEAAEKAVRAGYPLVEGLLIVELEGPKEEVAEEALVLERVLRESGALE
CCCHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
LRVAGSEAERQAIWKGRKAAFSAVGRLSPDYLVQDGVVPRSRLGEALKEIQRLSREYGLR
EEECCCHHHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCE
VANVFHAGDGNLHPLVLYDGKKPGELERAEALAGEILRLCVRLGGSLTGEHGIGVEKKGY
EEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
MPEMFAPEDLLAMEEVKRALDPKGLANRGKVLPEVAGAHA
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC
>Mature Secondary Structure 
GFLEELKALLPGRVLTREAELAPYESDALTAYRKRPLAVALPERKEEVIGVVRLCHQYG
CHHHHHHHHCCCHHEECCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHC
VPFVARGSGTSLSGGSLPVEGGVVIALNRMNRILRLDPKARIAVVEPGVVNLKVSQEAAP
CCEEECCCCCCCCCCCCCCCCCEEEEEECCCHHEEECCCCEEEEECCCEEEEEECCCCCC
FGLYYAPDPSSQPVSTIGGNVAFNSGGAHCLKYGMTANHVLGLEVVTPTGEVVRLGGESL
EEEEECCCCCCCCHHHCCCCEEECCCCHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCC
EGVGPDLHGFFVGTEGLLGVAVEITLRLLPRPEAYHTVLAAYPSLEAAGEAVSRVIRAGL
CCCCCCCCEEEECCCCHHHEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
LPGAMEIMDRLSIEAAEKAVRAGYPLVEGLLIVELEGPKEEVAEEALVLERVLRESGALE
CCCHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEE
LRVAGSEAERQAIWKGRKAAFSAVGRLSPDYLVQDGVVPRSRLGEALKEIQRLSREYGLR
EEECCCHHHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCE
VANVFHAGDGNLHPLVLYDGKKPGELERAEALAGEILRLCVRLGGSLTGEHGIGVEKKGY
EEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
MPEMFAPEDLLAMEEVKRALDPKGLANRGKVLPEVAGAHA
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]