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The map label for this gene is jag [H]

Identifier: 55980411

GI number: 55980411

Start: 415654

End: 416223

Strand: Reverse

Name: jag [H]

Synonym: TTHA0442

Alternate gene names: 55980411

Gene position: 416223-415654 (Counterclockwise)

Preceding gene: 55980412

Following gene: 55980410

Centisome position: 22.5

GC content: 71.05

Gene sequence:

>570_bases
ATGAACGAGCGCAAGAAGAGCATTGACGAGCTCCTCTCCGACCTCGGGGTCCTCGAGGAGGCCCCGGTGGAAGTGGAGCT
CAAGGAATCGGGAACCCCCGAGGCCCAAGGGGACCCCAGGGCCTTCCTGGAAGAGTTCCTCGGGGGCCTCCTCCTCCTCC
TGGACCCCGGCCACCGCCTGGAGGTGAGGGTGGAAGGGGAGACCCTTAAGGCCGAGGTCAAGGGAGGGGACCTGGGCCGC
TTCATCGGGAAGGAGGGGCGGACCCTGAGGGCCGTGGAGCACCTGGCCCGGGTGGTCCTGGCCCGGCGCTTCGGCACCGG
CTACCGCCTCGTCCTGGACGCGGCGGGGTACAGAAGCCGGGCGGAGGCCCGGATCCGCCGCCTCGCCGAGGAGGCGGCCC
TCACCGTGGCCATGACCGGGGAGCCCCTCCACCTCCCCCCCATGCCCCCCGGGGAGCGGCGGATCGTGCACATGCTCCTC
AAGAACCACCCCCGGGTCACCACGGAAAGCCAAGGGGAGGGAGAGGAGCGGCACGTGGTGGTCTACCCCAGGCGCGAGGC
CCAAGGCTGA

Upstream 100 bases:

>100_bases
GGGGGTCACCCTCTACTGGGTCCTTTCCACCCTCATCGGCCTCGTGCAGCAGTGGCTCATCAACAAAAGCCTGGCCCCCC
TTAAGGCGTAAACTGGGGGC

Downstream 100 bases:

>100_bases
GGGCCCGAGGCCATGCCGGAGGCCCCGGGGGATACGCCGCTCGCCCTGGACCTGCTCCGCCGCCTGAGGCGGGCCCTCGG
CGCCGCCGGGCTTCCCGAGC

Product: DNA/RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MNERKKSIDELLSDLGVLEEAPVEVELKESGTPEAQGDPRAFLEEFLGGLLLLLDPGHRLEVRVEGETLKAEVKGGDLGR
FIGKEGRTLRAVEHLARVVLARRFGTGYRLVLDAAGYRSRAEARIRRLAEEAALTVAMTGEPLHLPPMPPGERRIVHMLL
KNHPRVTTESQGEGEERHVVVYPRREAQG

Sequences:

>Translated_189_residues
MNERKKSIDELLSDLGVLEEAPVEVELKESGTPEAQGDPRAFLEEFLGGLLLLLDPGHRLEVRVEGETLKAEVKGGDLGR
FIGKEGRTLRAVEHLARVVLARRFGTGYRLVLDAAGYRSRAEARIRRLAEEAALTVAMTGEPLHLPPMPPGERRIVHMLL
KNHPRVTTESQGEGEERHVVVYPRREAQG
>Mature_189_residues
MNERKKSIDELLSDLGVLEEAPVEVELKESGTPEAQGDPRAFLEEFLGGLLLLLDPGHRLEVRVEGETLKAEVKGGDLGR
FIGKEGRTLRAVEHLARVVLARRFGTGYRLVLDAAGYRSRAEARIRRLAEEAALTVAMTGEPLHLPPMPPGERRIVHMLL
KNHPRVTTESQGEGEERHVVVYPRREAQG

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 21009; Mature: 21009

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERKKSIDELLSDLGVLEEAPVEVELKESGTPEAQGDPRAFLEEFLGGLLLLLDPGHRL
CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCEEEEECCCCEE
EVRVEGETLKAEVKGGDLGRFIGKEGRTLRAVEHLARVVLARRFGTGYRLVLDAAGYRSR
EEEECCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
AEARIRRLAEEAALTVAMTGEPLHLPPMPPGERRIVHMLLKNHPRVTTESQGEGEERHVV
HHHHHHHHHHHHHEEEEECCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
VYPRREAQG
EECCCCCCC
>Mature Secondary Structure
MNERKKSIDELLSDLGVLEEAPVEVELKESGTPEAQGDPRAFLEEFLGGLLLLLDPGHRL
CCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCEEEEECCCCEE
EVRVEGETLKAEVKGGDLGRFIGKEGRTLRAVEHLARVVLARRFGTGYRLVLDAAGYRSR
EEEECCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
AEARIRRLAEEAALTVAMTGEPLHLPPMPPGERRIVHMLLKNHPRVTTESQGEGEERHVV
HHHHHHHHHHHHHEEEEECCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
VYPRREAQG
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]