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The map label for this gene is cspLB [H]

Identifier: 55980328

GI number: 55980328

Start: 339710

End: 339916

Strand: Direct

Name: cspLB [H]

Synonym: TTHA0359

Alternate gene names: 55980328

Gene position: 339710-339916 (Clockwise)

Preceding gene: 55980327

Following gene: 55980329

Centisome position: 18.37

GC content: 61.84

Gene sequence:

>207_bases
ATGAACAAAGGCATCGTAAAGTGGTTCAACGCGGAAAAAGGCTACGGTTTCATCCAGCAGGAGGAAGGTCCCGACGTGTT
CGTACACTTCTCGGCCATTGAGGCCGATGGCTTCCGCACCCTGAGCGAAGGGGAGCGCGTGGAGTTTGAGGTGGAGCCGG
GCCGCAACGGCAAGGGCCCCCAGGCCAGGCGGGTCCGGCGCCTCTAA

Upstream 100 bases:

>100_bases
GGCAAGCCCGGGAGGGGTTGACTTTTGCTTGGGCGCGTGAAACAATAAGTTACTTTCCGAAGCCAAAGATGGGTTTGGAA
AGGGATTTGAAGGAGTAGGC

Downstream 100 bases:

>100_bases
CAAGAGGGCTGCCCCTAAAGCCCCCCTGGTGGGGGGCTTTTTCTATCATGGAGGGGCCATGCGCATCCTGGTCTCCAACG
ACGACGGCATCTTCTCCCCG

Product: cold shock protein

Products: NA

Alternate protein names: CspB [H]

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MNKGIVKWFNAEKGYGFIQQEEGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRNGKGPQARRVRRL

Sequences:

>Translated_68_residues
MNKGIVKWFNAEKGYGFIQQEEGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRNGKGPQARRVRRL
>Mature_68_residues
MNKGIVKWFNAEKGYGFIQQEEGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRNGKGPQARRVRRL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=57.5757575757576, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=61.1940298507463, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=54.5454545454545, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=58.7301587301587, Blast_Score=75, Evalue=5e-16,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=56.7164179104478, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=56.0606060606061, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787107, Length=58, Percent_Identity=53.448275862069, Blast_Score=65, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71983225, Length=63, Percent_Identity=49.2063492063492, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983217, Length=63, Percent_Identity=49.2063492063492, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7769; Mature: 7769

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGIVKWFNAEKGYGFIQQEEGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRNGKGP
CCCCEEEEECCCCCCCEEEECCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCCCCCC
QARRVRRL
CCHHCCCC
>Mature Secondary Structure
MNKGIVKWFNAEKGYGFIQQEEGPDVFVHFSAIEADGFRTLSEGERVEFEVEPGRNGKGP
CCCCEEEEECCCCCCCEEEECCCCEEEEEEEEEECCCCEECCCCCEEEEEECCCCCCCCC
QARRVRRL
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]