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The map label for this gene is deoB [H]

Identifier: 55980293

GI number: 55980293

Start: 311697

End: 312842

Strand: Reverse

Name: deoB [H]

Synonym: TTHA0324

Alternate gene names: 55980293

Gene position: 312842-311697 (Counterclockwise)

Preceding gene: 55980294

Following gene: 55980292

Centisome position: 16.91

GC content: 70.51

Gene sequence:

>1146_bases
TTGAAGGCGGTGGCCATCGTTTTGGACTCCGTGGGCCTGGGCTACCTGCCCGACGCCCCCCTCTTCGGCGACGAGGGGGC
GGACACCTTGGACCACACGGTCCTGAAGACCGGGATCGCCCTCCCCCACCTGGCCGGCCTCGGCCTCGGCCGGGTCCCCG
GGGTCCACACCCTGCCCCGCGCCGAGCGGCCCCGGGGCGGGTTCGGCCGCATGCGGGAGGTGAACCCCGGCAAGGACACC
ACCACGGGGCACTGGGAGTTCGTGGGGATCCACCTGGAAAAGCCGTTCCGCACCTTTCCCCACGGGTTTCCCGAGGACGT
TCTCCGGGAGTGGGCCGAGGCCATCGGGGTGGGAGGGTGGCTTTTGAACCGCCCCTACTCGGGGACGGAGGCCATCCGCG
ACCACGGGGAGGCCCACCTCAAGACGGGCTACCCCATCGTCTACACCTCCGCCGACAGCGTCTTCCAGGTGGCGGCCCAC
GTGGACGTGGTCCCCGTGGAGGAGCTTTACCGCTTTTGCCAGGTGGCCCGGGAGAGGCTCGTGGGCGAGCTCCAGGTGGC
CCGGGTCATCGCCCGGCCCTTCGCCGGGGAGCCGGGGAGGTTCTACCGGCTGGAGCACCTCCGGAAGGACTTCGCCCTGG
AGCCCCCGAGGAACGTCCTGGACGTCCTCAAGGAGGGGGGCCTCGAGGTGGTGGGGGTGGGGAAGATCCCCGACATCTAC
GCGGGGCGCGGCTTCACCCGGAAGGTCAAGACCAAGGACAACCGAGACGGCCTGGAGAAGACCCTGGCCCTCATGGGGGA
GCCCTTTTCCGGCCTCGTCTTCACCAACCTGGTGGACTTTGACTCCAAGTACGGCCACCGCCGCGACCCCGAGGGGTACG
GGAGGGCCCTCGTGGAGCTGGACGCCTTCCTCCCGAGGCTTCTTGCCGCCTTGGGGCCCGAGGACCACCTCTTCCTGGTC
TCGGACCACGGCAACGACCCCACCTTCTTCGGCACCGACCACACCCGGGAGTACGGGATGCTCCTCTGGGTGGGGCCGGG
GGTGGAGGGGGAGCTCGGCACCCGGGAGACCTTCGCCGACCTCGGGGCCACCTGGGCCCGCCTCTTCGGCCTGGCCTGGG
ACGGCCCCGGAACGAGCCTCGTCTGA

Upstream 100 bases:

>100_bases
TGGAGGAGTTCCAGGCGGTGCGGGCCCTCTCCGAGATGGCCCCGGAGGAGCTCATGGCCCTGGCCGAGGAGGAGGAGGAG
GACGAGGGGGGCCTCAGGTC

Downstream 100 bases:

>100_bases
GCCATGTCCCTCACCTGGCGCGACCTCTTGGACATCTTCCTGGTGGGCGTCCTCCTCTACTCCCTCTACCGCATCCTCGC
CGGCACCCGGGCCCTGAACC

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MKAVAIVLDSVGLGYLPDAPLFGDEGADTLDHTVLKTGIALPHLAGLGLGRVPGVHTLPRAERPRGGFGRMREVNPGKDT
TTGHWEFVGIHLEKPFRTFPHGFPEDVLREWAEAIGVGGWLLNRPYSGTEAIRDHGEAHLKTGYPIVYTSADSVFQVAAH
VDVVPVEELYRFCQVARERLVGELQVARVIARPFAGEPGRFYRLEHLRKDFALEPPRNVLDVLKEGGLEVVGVGKIPDIY
AGRGFTRKVKTKDNRDGLEKTLALMGEPFSGLVFTNLVDFDSKYGHRRDPEGYGRALVELDAFLPRLLAALGPEDHLFLV
SDHGNDPTFFGTDHTREYGMLLWVGPGVEGELGTRETFADLGATWARLFGLAWDGPGTSLV

Sequences:

>Translated_381_residues
MKAVAIVLDSVGLGYLPDAPLFGDEGADTLDHTVLKTGIALPHLAGLGLGRVPGVHTLPRAERPRGGFGRMREVNPGKDT
TTGHWEFVGIHLEKPFRTFPHGFPEDVLREWAEAIGVGGWLLNRPYSGTEAIRDHGEAHLKTGYPIVYTSADSVFQVAAH
VDVVPVEELYRFCQVARERLVGELQVARVIARPFAGEPGRFYRLEHLRKDFALEPPRNVLDVLKEGGLEVVGVGKIPDIY
AGRGFTRKVKTKDNRDGLEKTLALMGEPFSGLVFTNLVDFDSKYGHRRDPEGYGRALVELDAFLPRLLAALGPEDHLFLV
SDHGNDPTFFGTDHTREYGMLLWVGPGVEGELGTRETFADLGATWARLFGLAWDGPGTSLV
>Mature_381_residues
MKAVAIVLDSVGLGYLPDAPLFGDEGADTLDHTVLKTGIALPHLAGLGLGRVPGVHTLPRAERPRGGFGRMREVNPGKDT
TTGHWEFVGIHLEKPFRTFPHGFPEDVLREWAEAIGVGGWLLNRPYSGTEAIRDHGEAHLKTGYPIVYTSADSVFQVAAH
VDVVPVEELYRFCQVARERLVGELQVARVIARPFAGEPGRFYRLEHLRKDFALEPPRNVLDVLKEGGLEVVGVGKIPDIY
AGRGFTRKVKTKDNRDGLEKTLALMGEPFSGLVFTNLVDFDSKYGHRRDPEGYGRALVELDAFLPRLLAALGPEDHLFLV
SDHGNDPTFFGTDHTREYGMLLWVGPGVEGELGTRETFADLGATWARLFGLAWDGPGTSLV

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=396, Percent_Identity=41.4141414141414, Blast_Score=258, Evalue=3e-70,
Organism=Escherichia coli, GI1789781, Length=408, Percent_Identity=27.2058823529412, Blast_Score=104, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 41850; Mature: 41850

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAVAIVLDSVGLGYLPDAPLFGDEGADTLDHTVLKTGIALPHLAGLGLGRVPGVHTLPR
CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
AERPRGGFGRMREVNPGKDTTTGHWEFVGIHLEKPFRTFPHGFPEDVLREWAEAIGVGGW
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHHCCCCH
LLNRPYSGTEAIRDHGEAHLKTGYPIVYTSADSVFQVAAHVDVVPVEELYRFCQVARERL
HHCCCCCCHHHHHHCCCEEEECCCCEEEECCHHHHHHHHHCCEECHHHHHHHHHHHHHHH
VGELQVARVIARPFAGEPGRFYRLEHLRKDFALEPPRNVLDVLKEGGLEVVGVGKIPDIY
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCC
AGRGFTRKVKTKDNRDGLEKTLALMGEPFSGLVFTNLVDFDSKYGHRRDPEGYGRALVEL
CCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
DAFLPRLLAALGPEDHLFLVSDHGNDPTFFGTDHTREYGMLLWVGPGVEGELGTRETFAD
HHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCHHHHHH
LGATWARLFGLAWDGPGTSLV
HHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKAVAIVLDSVGLGYLPDAPLFGDEGADTLDHTVLKTGIALPHLAGLGLGRVPGVHTLPR
CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
AERPRGGFGRMREVNPGKDTTTGHWEFVGIHLEKPFRTFPHGFPEDVLREWAEAIGVGGW
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHCCCCCCHHHHHHHHHHHCCCCH
LLNRPYSGTEAIRDHGEAHLKTGYPIVYTSADSVFQVAAHVDVVPVEELYRFCQVARERL
HHCCCCCCHHHHHHCCCEEEECCCCEEEECCHHHHHHHHHCCEECHHHHHHHHHHHHHHH
VGELQVARVIARPFAGEPGRFYRLEHLRKDFALEPPRNVLDVLKEGGLEVVGVGKIPDIY
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEECCCCCCCC
AGRGFTRKVKTKDNRDGLEKTLALMGEPFSGLVFTNLVDFDSKYGHRRDPEGYGRALVEL
CCCCCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
DAFLPRLLAALGPEDHLFLVSDHGNDPTFFGTDHTREYGMLLWVGPGVEGELGTRETFAD
HHHHHHHHHHHCCCCCEEEEECCCCCCCEECCCCCCCCCEEEEECCCCCCCCCCHHHHHH
LGATWARLFGLAWDGPGTSLV
HHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]