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The map label for this gene is ysgA [H]

Identifier: 55980244

GI number: 55980244

Start: 261493

End: 262275

Strand: Reverse

Name: ysgA [H]

Synonym: TTHA0275

Alternate gene names: 55980244

Gene position: 262275-261493 (Counterclockwise)

Preceding gene: 55980245

Following gene: 55980242

Centisome position: 14.18

GC content: 73.56

Gene sequence:

>783_bases
GTGCGGATTGAAAGCCCGCAAAACCCCCGGGTAAAGGCCCTCGCCGCCCTCAAGGAGCGGAAGGAGCGGGAGCGGACCGG
CCGCTTTCTCGTGGAGGGGCGGCGGGAGGTGGAAAGGGCCCTCGAGGCGGGCCTCTCCCTGGAGACCCTCCTCCTCGGGC
CCAAGGCCCGCCCCGAGGACCGCGCCCTGGCCGGGGGCGCGGAGGTGTTGGAGCTTTCGGAAAGGGCCCTGGCCCGGGTC
TCCACCCGGGAGAACCCCGCCCAGGTCCTCGGGGTCTTCCGCCTCCCCCGAAGAAGCCTCGCCGGGGTGACCCTCGGGGC
CGCCCCCCTGGTCCTCGTCCTCTTGGGCCTGGAGAAGCCCGGCAACCTGGGGGCCATCCTCCGGGCGGCGGACGGGGCGG
GGGCGGACCTCGTCCTGGTGGCCGAGGGGGTGGACCTCTTTAGCCCCCAGGTGATCCGCAACTCCACGGGGGCGGTCTTC
GCCCTTCCCGTCTACCCCGTGGCGGAGGGGGAGGCGGCCCGCTTCCTGGAGGAACACAACCTCCCCCTGGTGGCGGCCAC
CCCCGAGGGGGAGAGGCTCTACTGGGAGGGGGACTACCGGGGAGGGGTGGCCTTCCTCCTCGGGGCGGAGGACAAGGGCC
TCCCCGAGGCCTGGAAGCGGCGGGCCCAGGTGCGGGTGCGGATCCCCATGCGGGGGCGAGCGGACAGCCTCAACGTGGCC
GTCACCGCCGCCCTCCTCCTCTACGAGGCCCTGCGGCAGCGTTCAGGGGGCGCACCCTTATAA

Upstream 100 bases:

>100_bases
GTCCTCCGGGTCTCCCGGATGCTGGAGGAGCTTCCCCAGGTGGAAAGGCTCCTTCTGGAGCTTTCCGGTCCCCGGGTGGC
GGCCTTTACAATAAGCCTCC

Downstream 100 bases:

>100_bases
CCCCCCCCTCAACCCCCTGGGCTTGCCTTGCAAAGGTCAGGAGGACGGGTGTATATCTCTCTCCTGATGGGCAAGCGAGG
CTTCCTTCGCAGGGAGGCAA

Product: RNA 2'-O ribose methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELSERALARV
STRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF
ALPVYPVAEGEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVA
VTAALLLYEALRQRSGGAPL

Sequences:

>Translated_260_residues
MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELSERALARV
STRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF
ALPVYPVAEGEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVA
VTAALLLYEALRQRSGGAPL
>Mature_260_residues
MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPEDRALAGGAEVLELSERALARV
STRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKPGNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVF
ALPVYPVAEGEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVA
VTAALLLYEALRQRSGGAPL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=305, Percent_Identity=26.5573770491803, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1790623, Length=149, Percent_Identity=32.8859060402685, Blast_Score=84, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24666840, Length=278, Percent_Identity=25.8992805755396, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27999; Mature: 27999

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPED
CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
RALAGGAEVLELSERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKP
HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCEECHHHHHHHHHCCCCC
GNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVFALPVYPVAEGEAARFLEEHN
CCCEEEEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEECEECCCCHHHHHHHHCC
LPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVA
CCEEEECCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCCHHH
VTAALLLYEALRQRSGGAPL
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRIESPQNPRVKALAALKERKERERTGRFLVEGRREVERALEAGLSLETLLLGPKARPED
CCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
RALAGGAEVLELSERALARVSTRENPAQVLGVFRLPRRSLAGVTLGAAPLVLVLLGLEKP
HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCEECHHHHHHHHHCCCCC
GNLGAILRAADGAGADLVLVAEGVDLFSPQVIRNSTGAVFALPVYPVAEGEAARFLEEHN
CCCEEEEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCEEEEECEECCCCHHHHHHHHCC
LPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVA
CCEEEECCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHCCCEEEEEECCCCCCCCCHHH
VTAALLLYEALRQRSGGAPL
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]