Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 55980213

GI number: 55980213

Start: 235462

End: 236253

Strand: Reverse

Name: ssb [H]

Synonym: TTHA0244

Alternate gene names: 55980213

Gene position: 236253-235462 (Counterclockwise)

Preceding gene: 55980214

Following gene: 55980212

Centisome position: 12.77

GC content: 69.7

Gene sequence:

>792_bases
ATGGCTCGAGGCCTGAACCGCGTTTTCCTAATCGGCGCCCTCGCCACCCGGCCGGACATGCGCTACACTCCGGCGGGGCT
CGCCATTTTGGACCTGACCCTCGCCGGTCAGGACCTGCTCCTTTCCGATAACGGGGGGGAGCGGGAGGTGTCCTGGTACC
ACCGGGTGAGGCTCTTAGGCCGCCAGGCGGAGATGTGGGGCGACCTCTTGGACCAAGGGCAGCTCGTCTTCGTGGAGGGC
CGCCTGGAGTACCGCCAGTGGGAAAGGGAGGGGGAGAGGCGGAGCGAGCTCCAGATCCGGGCCGACTTCCTGGACCCCCT
GGACGACCGGGGGAAGGAGCGGGCGGAGGACAGCCGGGGCCAGCCCAGGCTCCGCGCCGCCCTGAACCAGGTCTTCCTCA
TGGGCAACCTGACCCGGGACCCGGAACTCCGCTACACCCCCCAGGGCACCGCGGTGGCCCGGCTGGGCCTGGCGGTGAAC
GAGCGCCGCCAGGGGGCGGAGGAGCGCACCCACTTCGTGGAGGTTCAGGCCTGGCGCGACCTGGCGGAGTGGGCCGCCGA
GCTGAGGAAGGGCGACGGCCTTTTCGTGATCGGCAGGTTGGTGAACGACTCCTGGACCAGCTCCAGCGGCGAGCGGCGCT
TCCAGACCCGTGTGGAGGCCCTCAGGCTGGAGCGCCCCACCCGTGGACCTGCCCAGGCCGGCGGAAGCAGGTCCCGCGAA
GTCCAGACGGGTGGGGTGGACATTGACGAAGGCTTGGAAGACTTTCCGCCGGAGGAGGAGTTGCCGTTTTGA

Upstream 100 bases:

>100_bases
GAACGACCTGGCCCGGGAGCTCCGCATCCGGGACAACGTGCGCCGGGTCATGGTGGTGAAGTCCCAGGAGCCCTTCCTCG
CCAACGCGTAAACTGTTGAC

Downstream 100 bases:

>100_bases
GCACGAAGAACGCGAAACCCAAGAAGGAGGCGCAGAGGCGCCCGTCCCGCAAGGCTAAGGTCAAGGCCACCCTGGGGGAG
TTTGACCTCAGGGACTACCG

Product: single-stranded DNA binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MARGLNRVFLIGALATRPDMRYTPAGLAILDLTLAGQDLLLSDNGGEREVSWYHRVRLLGRQAEMWGDLLDQGQLVFVEG
RLEYRQWEREGERRSELQIRADFLDPLDDRGKERAEDSRGQPRLRAALNQVFLMGNLTRDPELRYTPQGTAVARLGLAVN
ERRQGAEERTHFVEVQAWRDLAEWAAELRKGDGLFVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQAGGSRSRE
VQTGGVDIDEGLEDFPPEEELPF

Sequences:

>Translated_263_residues
MARGLNRVFLIGALATRPDMRYTPAGLAILDLTLAGQDLLLSDNGGEREVSWYHRVRLLGRQAEMWGDLLDQGQLVFVEG
RLEYRQWEREGERRSELQIRADFLDPLDDRGKERAEDSRGQPRLRAALNQVFLMGNLTRDPELRYTPQGTAVARLGLAVN
ERRQGAEERTHFVEVQAWRDLAEWAAELRKGDGLFVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQAGGSRSRE
VQTGGVDIDEGLEDFPPEEELPF
>Mature_262_residues
ARGLNRVFLIGALATRPDMRYTPAGLAILDLTLAGQDLLLSDNGGEREVSWYHRVRLLGRQAEMWGDLLDQGQLVFVEGR
LEYRQWEREGERRSELQIRADFLDPLDDRGKERAEDSRGQPRLRAALNQVFLMGNLTRDPELRYTPQGTAVARLGLAVNE
RRQGAEERTHFVEVQAWRDLAEWAAELRKGDGLFVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQAGGSRSREV
QTGGVDIDEGLEDFPPEEELPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 SSB domains [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=100, Percent_Identity=36, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 29883; Mature: 29752

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGLNRVFLIGALATRPDMRYTPAGLAILDLTLAGQDLLLSDNGGEREVSWYHRVRLLG
CCCCCCEEEEEEEHHCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHH
RQAEMWGDLLDQGQLVFVEGRLEYRQWEREGERRSELQIRADFLDPLDDRGKERAEDSRG
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCHHHHHHEEEHHHCCCHHHCCHHHHHHCCC
QPRLRAALNQVFLMGNLTRDPELRYTPQGTAVARLGLAVNERRQGAEERTHFVEVQAWRD
CHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHEEHHHHHHH
LAEWAAELRKGDGLFVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQAGGSRSRE
HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCE
VQTGGVDIDEGLEDFPPEEELPF
EECCCCCHHHCHHHCCCCCCCCC
>Mature Secondary Structure 
ARGLNRVFLIGALATRPDMRYTPAGLAILDLTLAGQDLLLSDNGGEREVSWYHRVRLLG
CCCCCEEEEEEEHHCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHH
RQAEMWGDLLDQGQLVFVEGRLEYRQWEREGERRSELQIRADFLDPLDDRGKERAEDSRG
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCHHHHHHEEEHHHCCCHHHCCHHHHHHCCC
QPRLRAALNQVFLMGNLTRDPELRYTPQGTAVARLGLAVNERRQGAEERTHFVEVQAWRD
CHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCHHHHHHEEHHHHHHH
LAEWAAELRKGDGLFVIGRLVNDSWTSSSGERRFQTRVEALRLERPTRGPAQAGGSRSRE
HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCE
VQTGGVDIDEGLEDFPPEEELPF
EECCCCCHHHCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA