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The map label for this gene is yifB [H]

Identifier: 55980170

GI number: 55980170

Start: 197532

End: 199016

Strand: Reverse

Name: yifB [H]

Synonym: TTHA0201

Alternate gene names: 55980170

Gene position: 199016-197532 (Counterclockwise)

Preceding gene: 55980172

Following gene: 55980167

Centisome position: 10.76

GC content: 73.6

Gene sequence:

>1485_bases
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCTTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGAGGGTGCGGGCGGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTGGACGGGAGCCTGAGGCCCGTCCCCGGGGCGGTGAACCTGGCCCTGGGGGCCCTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCTTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAACGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCGCCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCTTTCCGCGCCCC
GCACCACACGGTGAGCTACGCTGGGCTCATCGGGGGTGGGGCCATTCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GGGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTTCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCAGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAAGGGAGGCCCAACGGCCTCCT
CTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGGATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Upstream 100 bases:

>100_bases
AGCTCGCGCGCCATCTGGCCCCATGATAAGGCAGTTTTCGCCTCTGCTCACGAAACGCCCACCTTGGGTGGAACTAACAG
CGCTGTGATAAACTCTCTCC

Downstream 100 bases:

>100_bases
GCGAGGCGCAAGGGCTCCACCTCCACGGGGGTGGAGTGGAAGGTGCTTCCCCCGCCCAGGTCGGTGAGCCTTTCCGAGGT
GAGGTGGTTCACGCCCTTGC

Product: Mg(2+) chelatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Sequences:

>Translated_494_residues
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL
>Mature_494_residues
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=493, Percent_Identity=45.841784989858, Blast_Score=424, Evalue=1e-120,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 52868; Mature: 52868

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50051 MCM_2 ; PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYP
CCCHHHHHHHCCCCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC
QARVVVNLAPAELRKEGSQFDLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPG
CCEEEEEECHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHECCCCCCCCCCCCCC
AVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQEAVAFLKGEEALAEARPEEA
HHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCHHCCCCCHHH
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDE
HHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEHHEECCCCCCCCCCEEHHHCCEEEEHH
FPEFSREALEALRQPLEDGVVTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCT
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGEGTEAVRERVLRARERMLARQ
HHHHHHHHHHHCCCHHHHHHHHEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
GRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC
EAHVAEALAYRRAL
HHHHHHHHHHHHCC
>Mature Secondary Structure
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYP
CCCHHHHHHHCCCCCEEEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCC
QARVVVNLAPAELRKEGSQFDLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPG
CCEEEEEECHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHECCCCCCCCCCCCCC
AVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQEAVAFLKGEEALAEARPEEA
HHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
HHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCHHCCCCCHHH
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDE
HHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEHHEECCCCCCCCCCEEHHHCCEEEEHH
FPEFSREALEALRQPLEDGVVTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCT
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGEGTEAVRERVLRARERMLARQ
HHHHHHHHHHHCCCHHHHHHHHEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
GRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC
EAHVAEALAYRRAL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1995430; 1379743; 9278503 [H]