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The map label for this gene is rnhB [H]

Identifier: 55980167

GI number: 55980167

Start: 193335

End: 193946

Strand: Reverse

Name: rnhB [H]

Synonym: TTHA0198

Alternate gene names: 55980167

Gene position: 193946-193335 (Counterclockwise)

Preceding gene: 55980170

Following gene: 55980166

Centisome position: 10.49

GC content: 71.24

Gene sequence:

>612_bases
ATGGCCGAAGGGCCCTTGGAAGCTCCCTTTTGGCGAAAAGGCCTCCTCGTGGCCGGTCTGGACGAGGCGGGGAGGGGGGC
CTGGGCGGGGCCCATCGTGGTGGGGGCGGTGGTCCTGCCCCCGGGGGAGTACCCCTTCCGGGACTCCAAGCTCCTCTCCC
CAAAGGCGAGGGAGCGCCTGGCGGAGAAGGTCAAGGAGGTGGCCCTGGCCTTTGCCCTGGGGGTGGCGGAGGCGGCGGAG
GTGGACCGGCTTGGGGTCCTCAAGGCCACCCTCCTCGCGGCGGAGAGGGCCCTCCTCTCCCTCCCCCTCGCCCCGGAGGC
CCTCGTCACCGACTACCTCCCCCTTCCCACCCCCCTTCCCCTCCTCTCCCCGCCCAAGGCGGACGAGAAAAGCCCCACGG
TGGCCGCGGCGAGCATCCTGGCCAAGGTCCACCGGGACCGGATCATGGACGAGCTGGACCGCCTCTACCCGGGCTACGGC
TTCGCCCGGCACAAGGGCTACGGCACCCAGGAGCACCAGGAGGCCCTCCTCGCCTTAGGGCCTAGCCCCGTCCACCGGAA
GCGCTTCGCCCCCGTGGCCCAGGCTCCCTTAAGGTTTCCTGAAGCTCCTTAG

Upstream 100 bases:

>100_bases
AGGGGGTCTCCACCCAGAAGGCCTGGGCGAGGGCCCCTCCCAGGAGGGCGAGGAAGGGCAGGAGGCGCCGGAGCATGCCC
TAAGCGTATAAGATGGCCCC

Downstream 100 bases:

>100_bases
GCCCTTTTGGGCCTAAACTTAGGGGAAGAGGTGGGCGGTATGCGGGTTTTCCTTCTGGCCCTTGCGGCCTTCCTTTCCGC
CTGCACCCTGACCCTTTACC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAEGPLEAPFWRKGLLVAGLDEAGRGAWAGPIVVGAVVLPPGEYPFRDSKLLSPKARERLAEKVKEVALAFALGVAEAAE
VDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLPLLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYG
FARHKGYGTQEHQEALLALGPSPVHRKRFAPVAQAPLRFPEAP

Sequences:

>Translated_203_residues
MAEGPLEAPFWRKGLLVAGLDEAGRGAWAGPIVVGAVVLPPGEYPFRDSKLLSPKARERLAEKVKEVALAFALGVAEAAE
VDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLPLLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYG
FARHKGYGTQEHQEALLALGPSPVHRKRFAPVAQAPLRFPEAP
>Mature_202_residues
AEGPLEAPFWRKGLLVAGLDEAGRGAWAGPIVVGAVVLPPGEYPFRDSKLLSPKARERLAEKVKEVALAFALGVAEAAEV
DRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLPLLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGF
ARHKGYGTQEHQEALLALGPSPVHRKRFAPVAQAPLRFPEAP

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=183, Percent_Identity=46.9945355191257, Blast_Score=146, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 21753; Mature: 21621

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGPLEAPFWRKGLLVAGLDEAGRGAWAGPIVVGAVVLPPGEYPFRDSKLLSPKARERL
CCCCCCCCCHHHCCCEEECCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCHHHHHHH
AEKVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC
LLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHCC
PSPVHRKRFAPVAQAPLRFPEAP
CCCHHHHHCCCHHHCCCCCCCCC
>Mature Secondary Structure 
AEGPLEAPFWRKGLLVAGLDEAGRGAWAGPIVVGAVVLPPGEYPFRDSKLLSPKARERL
CCCCCCCCHHHCCCEEECCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCHHHHHHH
AEKVKEVALAFALGVAEAAEVDRLGVLKATLLAAERALLSLPLAPEALVTDYLPLPTPLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC
LLSPPKADEKSPTVAAASILAKVHRDRIMDELDRLYPGYGFARHKGYGTQEHQEALLALG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHCC
PSPVHRKRFAPVAQAPLRFPEAP
CCCHHHHHCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA