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The map label for this gene is rpe [H]

Identifier: 55980075

GI number: 55980075

Start: 104998

End: 105660

Strand: Reverse

Name: rpe [H]

Synonym: TTHA0106

Alternate gene names: 55980075

Gene position: 105660-104998 (Counterclockwise)

Preceding gene: 55980076

Following gene: 55980073

Centisome position: 5.71

GC content: 69.68

Gene sequence:

>663_bases
GTGGGACCCGTGCGGTTCGCGCCCTCCATTCTCACGGCGGACCTGGCGAGGCTAGGGGAGGCCATAAGGGAGGCGGAGGC
GGCCGGGGTGGACTGGATCCACCTGGACGTGATGGACGGGGTCTTCGTCCCCAACCTCACCTTCGGGCCCCTCCTCGTGG
AGGCGGTCAGGCGGGTCACCTCCTTGCCCCTGGACGTTCACCTCATGATCGTAAAGCCGGAGCGCTACCTCGAGGACTTC
GCCCAAGCCGGGGCGGACCACATCACCGTGCACTTTGAGGCCACCTACCACCCCCACCGGGCGGTGCAGAAGGTGAAGGA
GCTGGGAAAGAAGGCGGGGCTCGCCGTGAACCCGGGGACGCCCCTGGAGGCCTTTGAACCCCTGCTCCCGGATCTGGACC
TGGCCCTCCTCATGAGCGTCAACCCCGGCTTCGGCGGCCAGCGCTACCTCCCCACGGCCACGGAGAGGCTCCGGCGCCTC
AAGGCCATGCGGGACCGGTTGAACCCCGCCTGCCTCATCGTGGTGGACGGCGGCATCAACCGGGACACCGTGGCCGAAGC
CCGGCGGGCGGGGGCGGACGTGGCCGTGGCGGGGAGCGCCCTCTTCAACGACAAACCCGTGGCGGAGAACCTGAAGGCCC
TCCGCCTCGCCCTGCTGGGCTAA

Upstream 100 bases:

>100_bases
TTCAGGACCCCGGCTTCCAGGCGGTTTTGGCGGAGCTTCTCCTCCTCTCCCTCATGGTGCTGACCCTGGCCTGGGCCTAC
CGCCTGGTGCGCGGGGTATA

Downstream 100 bases:

>100_bases
GGCCACCCCATGCCGGCGCAAGCGGGGGTATGGACGGGGCCTGCCCGGCGAGGCTTACGGCCTTGGGCGCCCCAGGACGA
GGGTCCAGTACCCTTCCCGC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MGPVRFAPSILTADLARLGEAIREAEAAGVDWIHLDVMDGVFVPNLTFGPLLVEAVRRVTSLPLDVHLMIVKPERYLEDF
AQAGADHITVHFEATYHPHRAVQKVKELGKKAGLAVNPGTPLEAFEPLLPDLDLALLMSVNPGFGGQRYLPTATERLRRL
KAMRDRLNPACLIVVDGGINRDTVAEARRAGADVAVAGSALFNDKPVAENLKALRLALLG

Sequences:

>Translated_220_residues
MGPVRFAPSILTADLARLGEAIREAEAAGVDWIHLDVMDGVFVPNLTFGPLLVEAVRRVTSLPLDVHLMIVKPERYLEDF
AQAGADHITVHFEATYHPHRAVQKVKELGKKAGLAVNPGTPLEAFEPLLPDLDLALLMSVNPGFGGQRYLPTATERLRRL
KAMRDRLNPACLIVVDGGINRDTVAEARRAGADVAVAGSALFNDKPVAENLKALRLALLG
>Mature_219_residues
GPVRFAPSILTADLARLGEAIREAEAAGVDWIHLDVMDGVFVPNLTFGPLLVEAVRRVTSLPLDVHLMIVKPERYLEDFA
QAGADHITVHFEATYHPHRAVQKVKELGKKAGLAVNPGTPLEAFEPLLPDLDLALLMSVNPGFGGQRYLPTATERLRRLK
AMRDRLNPACLIVVDGGINRDTVAEARRAGADVAVAGSALFNDKPVAENLKALRLALLG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=201, Percent_Identity=41.2935323383085, Blast_Score=164, Evalue=7e-41,
Organism=Homo sapiens, GI219879828, Length=201, Percent_Identity=39.8009950248756, Blast_Score=158, Evalue=4e-39,
Organism=Homo sapiens, GI24307923, Length=158, Percent_Identity=34.1772151898734, Blast_Score=102, Evalue=3e-22,
Organism=Escherichia coli, GI1789788, Length=219, Percent_Identity=45.2054794520548, Blast_Score=185, Evalue=2e-48,
Organism=Escherichia coli, GI1790523, Length=210, Percent_Identity=39.0476190476191, Blast_Score=153, Evalue=7e-39,
Organism=Escherichia coli, GI1790754, Length=198, Percent_Identity=31.3131313131313, Blast_Score=108, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17552948, Length=209, Percent_Identity=40.6698564593301, Blast_Score=156, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6322341, Length=210, Percent_Identity=41.9047619047619, Blast_Score=176, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24586301, Length=212, Percent_Identity=37.2641509433962, Blast_Score=147, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23806; Mature: 23675

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPVRFAPSILTADLARLGEAIREAEAAGVDWIHLDVMDGVFVPNLTFGPLLVEAVRRVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCHHHHHHHHHHHHH
SLPLDVHLMIVKPERYLEDFAQAGADHITVHFEATYHPHRAVQKVKELGKKAGLAVNPGT
CCCCEEEEEEECCHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEECCCC
PLEAFEPLLPDLDLALLMSVNPGFGGQRYLPTATERLRRLKAMRDRLNPACLIVVDGGIN
CHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
RDTVAEARRAGADVAVAGSALFNDKPVAENLKALRLALLG
HHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
GPVRFAPSILTADLARLGEAIREAEAAGVDWIHLDVMDGVFVPNLTFGPLLVEAVRRVT
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCHHHHHHHHHHHHH
SLPLDVHLMIVKPERYLEDFAQAGADHITVHFEATYHPHRAVQKVKELGKKAGLAVNPGT
CCCCEEEEEEECCHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEECCCC
PLEAFEPLLPDLDLALLMSVNPGFGGQRYLPTATERLRRLKAMRDRLNPACLIVVDGGIN
CHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
RDTVAEARRAGADVAVAGSALFNDKPVAENLKALRLALLG
HHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]