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The map label for this gene is motY [H]

Identifier: 54295802

GI number: 54295802

Start: 3299766

End: 3300650

Strand: Reverse

Name: motY [H]

Synonym: lpl2892

Alternate gene names: 54295802

Gene position: 3300650-3299766 (Counterclockwise)

Preceding gene: 54295805

Following gene: 54295801

Centisome position: 98.65

GC content: 40.79

Gene sequence:

>885_bases
ATGATTTCAGATCATTTTATATGCAAGAAAGCAAAAATTATTGCAATGAGTTCTTTGTTCATTACTACTGTCGTCTTTGC
TGCTCCCTCTATCCAATATGCAAGCCCTATGGGAGAAGAAAATTGGCGTATGACAGGCAATCCTCTTCGATGTGGCTTGT
CATTGACGATTCCAAATTATGGTATTGGCTACTTTGAACAATACGCTACCCAATCCCCTCACTTCATTCTGCGTAAATGG
GATCAAGTTCAACGGGCCTTGCCTGCTCAAGTTGTAGCAAGCCCCCCAGTATGGAAGCCATTATTGAAAGGGTCCTATCT
GGTAACCCGCACTTATATAAAACCCGGGGAGTATGGACTATTTTTAAATCGACAACCCGCTTTAAAATTATTGACGTTTT
TATCGCAAGGATATCAGGCAAATTTTAGCTATTTATCAGAGGAAGGATTCCGCACTACGGTTATACTCTCACCTGTTCGG
TTTCAAAAAGTGTACTCGCAGTATCAGCGTTGTCTTGGTGGTCTGTTGCCCTTCAACTATGAGGATGTAAAAGAAAGCGT
GTTTCATTTTGGGGTGGATAGTAAGTTATTGTCTGATGCTGATAAAGTGCAATTACGACGGATTGCCCAATACGTGGATG
CTGATGTACAAATTGATGTCATTAAGATTATTGGTCATGCTGACGATAGTGGCCGTAAAGGTTACAATAATGCCATTTCA
CAATATCGAGCAGAGTCTGTAAAAAATTATTTGATTAGGCTTGGAGTACCTCAAAGAAAACTATCAATAACATGGGTAGG
AGCTCTGCAACCGATAGCCAGGAATGATACTGACGAGGGGAGAGCTGCTAACAGACGTGTCGTTGTGACATTGATAAAAA
AATAA

Upstream 100 bases:

>100_bases
CGTCAGGGCGATTAATTATCAGAGTTTGCATAATAAAGGTTCCTGCATTATTGCCGATAAAAGAGAATAACATGAATTAG
GCAATTGGGATGAGCAAAAA

Downstream 100 bases:

>100_bases
ATTTTGTGATTAAAAAAATATCTTTTTATGATGGCATTTCATCCTCGAAAATCCCCTTCTTGGTCAACAAATTTCATTTG
AAAGAGACATGGCAATAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MISDHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHFILRKW
DQVQRALPAQVVASPPVWKPLLKGSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQANFSYLSEEGFRTTVILSPVR
FQKVYSQYQRCLGGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDSGRKGYNNAIS
QYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK

Sequences:

>Translated_294_residues
MISDHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHFILRKW
DQVQRALPAQVVASPPVWKPLLKGSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQANFSYLSEEGFRTTVILSPVR
FQKVYSQYQRCLGGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDSGRKGYNNAIS
QYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK
>Mature_294_residues
MISDHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNYGIGYFEQYATQSPHFILRKW
DQVQRALPAQVVASPPVWKPLLKGSYLVTRTYIKPGEYGLFLNRQPALKLLTFLSQGYQANFSYLSEEGFRTTVILSPVR
FQKVYSQYQRCLGGLLPFNYEDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDSGRKGYNNAIS
QYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33295; Mature: 33295

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISDHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEECCCCEEEEEEEECCCC
GIGYFEQYATQSPHFILRKWDQVQRALPAQVVASPPVWKPLLKGSYLVTRTYIKPGEYGL
CCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHCCCEEEEEEEECCCCEEE
FLNRQPALKLLTFLSQGYQANFSYLSEEGFRTTVILSPVRFQKVYSQYQRCLGGLLPFNY
EECCCHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCH
EDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDSGRKGYNNAIS
HHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHH
QYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK
HHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MISDHFICKKAKIIAMSSLFITTVVFAAPSIQYASPMGEENWRMTGNPLRCGLSLTIPNY
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCEECCCCEEEEEEEECCCC
GIGYFEQYATQSPHFILRKWDQVQRALPAQVVASPPVWKPLLKGSYLVTRTYIKPGEYGL
CCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCHHHHHCCCEEEEEEEECCCCEEE
FLNRQPALKLLTFLSQGYQANFSYLSEEGFRTTVILSPVRFQKVYSQYQRCLGGLLPFNY
EECCCHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCH
EDVKESVFHFGVDSKLLSDADKVQLRRIAQYVDADVQIDVIKIIGHADDSGRKGYNNAIS
HHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHH
QYRAESVKNYLIRLGVPQRKLSITWVGALQPIARNDTDEGRAANRRVVVTLIKK
HHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA