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The map label for this gene is rbfA [H]

Identifier: 54295601

GI number: 54295601

Start: 3066983

End: 3067354

Strand: Reverse

Name: rbfA [H]

Synonym: lpl2688

Alternate gene names: 54295601

Gene position: 3067354-3066983 (Counterclockwise)

Preceding gene: 54295602

Following gene: 54295600

Centisome position: 91.68

GC content: 38.71

Gene sequence:

>372_bases
ATGAATAATAATTTTAAGCGAACTGACAGAATTGCTGAGATGATCCAGCGCAAATTAGCTTTGATCATTCCCCAGGAAAT
AAAAGATCCTCGCTTGAAGGGTTTTGTTACCATTTCTGCAGTTAAAGTGGCTGCGGATTTGGGTCACGCCAAAATTTATT
TTACTGTTCTTAATGAAGATAAATCGGTGGTGACCAATATATTAAATGGTGCAGCCAGCTATTTGAGGAGCGCTCTGGCA
AGAAGTATTACTCTACGCACTGTGCCGCAACTTCATTTTATTTATGATGAATCGATTGAGTATGGACAACGGTTAAGCCG
ATTAATTGATGAAGTAAATCCCCCTGATTCAAGTAGTGATGACAACAATTGA

Upstream 100 bases:

>100_bases
CTTTGAATGCGGTATCGGCGTAAAAAACTACAACGATGTGAAGCCTGGGGATTTAATCGAGGTTTTTGAGACAGTCGAAA
TTAAGCGTGACTTATAGAAA

Downstream 100 bases:

>100_bases
ATCGAAGTGTTCCATAGATGGAATCCTGCTATTAAATAAACCACAAGGAATGACCTCTAACGCCGCTCTTCAGAAAGCCA
AACATTTGTTTGGTGCTAAA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MNNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALA
RSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSDDNN

Sequences:

>Translated_123_residues
MNNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALA
RSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSDDNN
>Mature_123_residues
MNNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNEDKSVVTNILNGAASYLRSALA
RSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSDDNN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=133, Percent_Identity=41.3533834586466, Blast_Score=98, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13860; Mature: 13860

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNED
CCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DNN
CCC
>Mature Secondary Structure
MNNNFKRTDRIAEMIQRKLALIIPQEIKDPRLKGFVTISAVKVAADLGHAKIYFTVLNED
CCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
KSVVTNILNGAASYLRSALARSITLRTVPQLHFIYDESIEYGQRLSRLIDEVNPPDSSSD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DNN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA