Click here to switch to the map view.

The map label for this gene is 54295440

Identifier: 54295440

GI number: 54295440

Start: 2881440

End: 2882681

Strand: Direct

Name: 54295440

Synonym: lpl2526

Alternate gene names: NA

Gene position: 2881440-2882681 (Clockwise)

Preceding gene: 54295439

Following gene: 54295441

Centisome position: 86.12

GC content: 35.59

Gene sequence:

>1242_bases
ATGCCTAAAATAAATAAAATTGTTAATGGAACAGACCTAACCCCTCATTATCTGAGTGAGCCAAACAAAGAATTTAAAAT
CTATCGTTATAATAACGAAGTTTATGCTGTTCGTTTTGATAATGATGAACCCATGGATTATGTTTTAATGTGGAAAAGTC
ACAAGAGTGAGCATACACAGAACAGTGAAATAATTAAAAATACTGAAGAGGATTATAAGGAGCTTGGAAAAGGAGATCAA
GGAACGGTATATGAGAAAACAGAAGATAAGGCTATGAAAGTATCTCGAGGCAAACATCCAAGAGAATTTTATGAAGAAAT
TAACCTCCATATTATAGAACAGCAATTTTTCCTTAAATATCATGGCATTCAAGAGTACTTTGTTCTAGGACTCTGGAATA
TCAAAAATGAAGAAAACGTGTATTTCTACATGCCTAAAATCAATGCGATCCCTATTAATAAAAAAATCGACCAGCCCAAA
ATTGAGGAATTTGTTCTTGCGCTTAAAGAACTTAATGATGCAGGGTACTGGCATCCTGATTTGGCAAATAATCCTTATCA
TATTAGTCCACAAAATCTGATTGCAACAGAGGAAATGGTAAAGACTATTGATCTTGATGGTGGCTTTCGGTACGACCAGG
GAAGAGTTGATGAACTCAGCAGGAAGTCTCTTGTTTATGGTAAAGATCAATGGCTATATGTCTATAATTTCATCTATCCA
CCCACCGATGAGGAGGATAACAGAATTGATTGGAGAGTCCCTATAGATAAATGGTATGAAAATAACAGAGACGGATCTTT
ATCGGATAATCCCCATACGTTGCTTCGATTTTACCATGAGGGAGTTATATCATTGCCAAAAAAACTTGTCCATGATCTGC
ATGAGACAATATTAGAAGAGTTATCCCAGGATAAAAAATTTAAAAAACATTCGCATGAGGTAGGGGTGAATCGCTTTTTT
AGCCCGAAAAAACAAGAAATCTATGAGGGTTTAAAGGGTGATGGGCTAAAAAAAGTGATCCTGAAAGAACTTAGAGATTC
GTTGGCTGAGATAAGAACAATGGAGCAATTGGAGGAAAAAAAACTGGAGTTTTTAGCTTCCCCAGAAATGCAAATTCTTG
CTGAAGGTCAGGATAAGACAACAAAAGCACTGAACTTAAAAACCAGTTCTCGTAAAAAGGTGATGGTAATATTTAAAGAA
GCAGAAGAGCGAATACTGAATAGCCCTAATGTAAGCATTTAG

Upstream 100 bases:

>100_bases
ATTTAGCTCAAAGTGAATAACTCATCAACCATCTTATTTGTATTCTGAATTTTTTTTCACTATAATGCTCAAATATTCAA
CTAATATGTTAGAGCTTGCT

Downstream 100 bases:

>100_bases
GACGTGTCCATTTTAAATTCTGCGAATAGCATGCTTTTATGTGAGTTAGTTTCGGCTTAATTCAAATAACTCTTGAAAAA
TTAATTAAGCCTTTTTCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MPKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFDNDEPMDYVLMWKSHKSEHTQNSEIIKNTEEDYKELGKGDQ
GTVYEKTEDKAMKVSRGKHPREFYEEINLHIIEQQFFLKYHGIQEYFVLGLWNIKNEENVYFYMPKINAIPINKKIDQPK
IEEFVLALKELNDAGYWHPDLANNPYHISPQNLIATEEMVKTIDLDGGFRYDQGRVDELSRKSLVYGKDQWLYVYNFIYP
PTDEEDNRIDWRVPIDKWYENNRDGSLSDNPHTLLRFYHEGVISLPKKLVHDLHETILEELSQDKKFKKHSHEVGVNRFF
SPKKQEIYEGLKGDGLKKVILKELRDSLAEIRTMEQLEEKKLEFLASPEMQILAEGQDKTTKALNLKTSSRKKVMVIFKE
AEERILNSPNVSI

Sequences:

>Translated_413_residues
MPKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFDNDEPMDYVLMWKSHKSEHTQNSEIIKNTEEDYKELGKGDQ
GTVYEKTEDKAMKVSRGKHPREFYEEINLHIIEQQFFLKYHGIQEYFVLGLWNIKNEENVYFYMPKINAIPINKKIDQPK
IEEFVLALKELNDAGYWHPDLANNPYHISPQNLIATEEMVKTIDLDGGFRYDQGRVDELSRKSLVYGKDQWLYVYNFIYP
PTDEEDNRIDWRVPIDKWYENNRDGSLSDNPHTLLRFYHEGVISLPKKLVHDLHETILEELSQDKKFKKHSHEVGVNRFF
SPKKQEIYEGLKGDGLKKVILKELRDSLAEIRTMEQLEEKKLEFLASPEMQILAEGQDKTTKALNLKTSSRKKVMVIFKE
AEERILNSPNVSI
>Mature_412_residues
PKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFDNDEPMDYVLMWKSHKSEHTQNSEIIKNTEEDYKELGKGDQG
TVYEKTEDKAMKVSRGKHPREFYEEINLHIIEQQFFLKYHGIQEYFVLGLWNIKNEENVYFYMPKINAIPINKKIDQPKI
EEFVLALKELNDAGYWHPDLANNPYHISPQNLIATEEMVKTIDLDGGFRYDQGRVDELSRKSLVYGKDQWLYVYNFIYPP
TDEEDNRIDWRVPIDKWYENNRDGSLSDNPHTLLRFYHEGVISLPKKLVHDLHETILEELSQDKKFKKHSHEVGVNRFFS
PKKQEIYEGLKGDGLKKVILKELRDSLAEIRTMEQLEEKKLEFLASPEMQILAEGQDKTTKALNLKTSSRKKVMVIFKEA
EERILNSPNVSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48800; Mature: 48669

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFDNDEPMDYVLMWKSHKSEHTQ
CCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCCCC
NSEIIKNTEEDYKELGKGDQGTVYEKTEDKAMKVSRGKHPREFYEEINLHIIEQQFFLKY
CHHHHHCCHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHCCEEEEHHHHHHHH
HGIQEYFVLGLWNIKNEENVYFYMPKINAIPINKKIDQPKIEEFVLALKELNDAGYWHPD
CCCHHEEEEEEEECCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC
LANNPYHISPQNLIATEEMVKTIDLDGGFRYDQGRVDELSRKSLVYGKDQWLYVYNFIYP
CCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEEECC
PTDEEDNRIDWRVPIDKWYENNRDGSLSDNPHTLLRFYHEGVISLPKKLVHDLHETILEE
CCCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQDKKFKKHSHEVGVNRFFSPKKQEIYEGLKGDGLKKVILKELRDSLAEIRTMEQLEEK
HHHHHHHHHHHHHHCHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLEFLASPEMQILAEGQDKTTKALNLKTSSRKKVMVIFKEAEERILNSPNVSI
HHHHHCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHCCCCCCC
>Mature Secondary Structure 
PKINKIVNGTDLTPHYLSEPNKEFKIYRYNNEVYAVRFDNDEPMDYVLMWKSHKSEHTQ
CCCCCCCCCCCCCCHHHCCCCCCEEEEEECCEEEEEEECCCCCCEEEEEEECCCCCCCC
NSEIIKNTEEDYKELGKGDQGTVYEKTEDKAMKVSRGKHPREFYEEINLHIIEQQFFLKY
CHHHHHCCHHHHHHHCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHCCEEEEHHHHHHHH
HGIQEYFVLGLWNIKNEENVYFYMPKINAIPINKKIDQPKIEEFVLALKELNDAGYWHPD
CCCHHEEEEEEEECCCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCC
LANNPYHISPQNLIATEEMVKTIDLDGGFRYDQGRVDELSRKSLVYGKDQWLYVYNFIYP
CCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEECCCCEEEEEEEECC
PTDEEDNRIDWRVPIDKWYENNRDGSLSDNPHTLLRFYHEGVISLPKKLVHDLHETILEE
CCCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSQDKKFKKHSHEVGVNRFFSPKKQEIYEGLKGDGLKKVILKELRDSLAEIRTMEQLEEK
HHHHHHHHHHHHHHCHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLEFLASPEMQILAEGQDKTTKALNLKTSSRKKVMVIFKEAEERILNSPNVSI
HHHHHCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA