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The map label for this gene is smf [H]

Identifier: 54295434

GI number: 54295434

Start: 2874286

End: 2875371

Strand: Direct

Name: smf [H]

Synonym: lpl2520

Alternate gene names: 54295434

Gene position: 2874286-2875371 (Clockwise)

Preceding gene: 54295433

Following gene: 54295435

Centisome position: 85.91

GC content: 42.36

Gene sequence:

>1086_bases
ATGAATAATCTGCAACCCCTCCTCGCCTTAAACAGGATGAAAAAAATTGGCCCCCGAACCGTATTAAAACTGCAAAAAAG
ATGGCCTGATTTAAACCTTATGTTCCAACTGTCTAGTGTTGCTCTGGAAGAAGCGGGCTTGCCATCCTGGTTGGCACAAA
CCATAAAAAATTTTGATCCGGACTTTATAAAAACTGACTTGGACTGGTTAAGTTCATCAGAAAATCATCATATTTTAACT
TGGGACTCCCCCTATTATCCCGCATTGCTCAAAGAAATAGCCGATCCTCCCTTCATTTTATACGCTAAAGGTGAGCTGTC
CGCTTTGACACAGCCCAACCTGGCTATTGTTGGAAGTCGCAATGCTTCTGTAACAGGAAACGAGAATGCCCGAGCATTCT
CCAGGGAAATTTCCAGGCATGGGGTAAGCATAGTGAGTGGTTTAGCCTTGGGAATTGATGCTCATGCTCATTTAGGTTGT
CTGGAAGAAGGCGGCAAAACGATAGCGGTCTTAGGTACGGGAATTGATTGTATCTATCCGCGCCGGCATTTAAAATTAGC
TGAGCAAATTACAGAGAATGGTTTATTATTAAGCGAATTTCCTTTAAAAAGTCCACCAATTGCTGGACATTTTCCACTCA
GAAATCGTATAATAAGCGGTCTATCATTATGCATTTTGGTTATCGAGGCAGCAATTAAAAGCGGTTCTTTAATTACAGCA
AGAATGGCTCTGGAACAAAACAGAGATGTATTGGCTATTCCCGGATCGATTCATAACCCGTTAGCCAGGGGCTGCCACTA
CTTATTGCAACAGGGTGCGAAATTAGTAACTTCAGTGGCTGATGTTCTTGATGAGCTAAAAATTGAGCACCATCAGTTCA
CTTCTAATAAACCAATTTTTTCCCTTGCCAGCGGTAAGGAAAACCTAGTAAAGTTCATTGGTTTTGAAACTACGACTATC
GATCAAATCATTGATCGTAGCGGATATGGCATGGAACAAGTCACGAGTGGACTGGCTGAACTAGAATTGAAAGGGGCTGT
GATGGCAGTGCCCGGTGGCTACATAAGGTGTGAATATGAAAGATAA

Upstream 100 bases:

>100_bases
TTGGCGAAGCTATGGTGTTTCGTGTGTTTACAAAAGCAAGTTATGCCCTGATAGTAAGGTCCACGCGTGCTATTCATTTA
TTAGATACAGTAACGAACCC

Downstream 100 bases:

>100_bases
TTTATTTGAAATGTTATTGAATTTGTTTGAAAAAAGTCTTACTCAACTCCAAAAAAGCCATAAATCTAATGATCAGGACT
CCCAAAGTCAATTGCTTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSSVALEEAGLPSWLAQTIKNFDPDFIKTDLDWLSSSENHHILT
WDSPYYPALLKEIADPPFILYAKGELSALTQPNLAIVGSRNASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGC
LEEGGKTIAVLGTGIDCIYPRRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIFSLASGKENLVKFIGFETTTI
DQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYER

Sequences:

>Translated_361_residues
MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSSVALEEAGLPSWLAQTIKNFDPDFIKTDLDWLSSSENHHILT
WDSPYYPALLKEIADPPFILYAKGELSALTQPNLAIVGSRNASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGC
LEEGGKTIAVLGTGIDCIYPRRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIFSLASGKENLVKFIGFETTTI
DQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYER
>Mature_361_residues
MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSSVALEEAGLPSWLAQTIKNFDPDFIKTDLDWLSSSENHHILT
WDSPYYPALLKEIADPPFILYAKGELSALTQPNLAIVGSRNASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGC
LEEGGKTIAVLGTGIDCIYPRRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIFSLASGKENLVKFIGFETTTI
DQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYER

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=330, Percent_Identity=44.2424242424242, Blast_Score=253, Evalue=2e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 39588; Mature: 39588

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSSVALEEAGLPSWLAQTIKNFDP
CCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHCCCC
DFIKTDLDWLSSSENHHILTWDSPYYPALLKEIADPPFILYAKGELSALTQPNLAIVGSR
HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC
NASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGCLEEGGKTIAVLGTGIDCIYP
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCEECC
RRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
HHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIF
EEHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
SLASGKENLVKFIGFETTTIDQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYE
EECCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHEEECCEEEECCCCEEEEEEC
R
C
>Mature Secondary Structure
MNNLQPLLALNRMKKIGPRTVLKLQKRWPDLNLMFQLSSVALEEAGLPSWLAQTIKNFDP
CCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHHHHHHHHHCCCC
DFIKTDLDWLSSSENHHILTWDSPYYPALLKEIADPPFILYAKGELSALTQPNLAIVGSR
HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC
NASVTGNENARAFSREISRHGVSIVSGLALGIDAHAHLGCLEEGGKTIAVLGTGIDCIYP
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCEECC
RRHLKLAEQITENGLLLSEFPLKSPPIAGHFPLRNRIISGLSLCILVIEAAIKSGSLITA
HHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVADVLDELKIEHHQFTSNKPIF
EEHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
SLASGKENLVKFIGFETTTIDQIIDRSGYGMEQVTSGLAELELKGAVMAVPGGYIRCEYE
EECCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHEEECCEEEECCCCEEEEEEC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]