Click here to switch to the map view.

The map label for this gene is 54295418

Identifier: 54295418

GI number: 54295418

Start: 2855908

End: 2857074

Strand: Direct

Name: 54295418

Synonym: lpl2504

Alternate gene names: NA

Gene position: 2855908-2857074 (Clockwise)

Preceding gene: 54295410

Following gene: 54295419

Centisome position: 85.36

GC content: 38.99

Gene sequence:

>1167_bases
ATGTCGGTCGAGATGAGCAAAACCTCCAGTGTCAGATTCCCTCCTGGGCAAGAAATCAAATTAGCAAAACCGGCGACAGA
ACTTTATGTAGGACAAATTCTGAAAACGGTTGTTGTCACAACACTGTCTAATGATCAGGTTCTTATCAATATCAATGGGC
AAAATCTCAACGCAAAAGCATCTCATCATTTTACACCGGGAGAGTTATTTGAAGTAAAAGTCTTAGCGAACCACCCCGAA
ACCATCCTTGAAGTGCAACAAAAAACACCGCTTCCATCTCTATTGCAAAATGCGTTACTTCAGTATTTACCAAAACAAGC
ACCAGCTACCAATCTTTTACAGACGCTGACTCAATTGATGGCAGAAAATAAGTTATCGGCTCCCATCAATCAGGTTATGA
AAACCATTTTAGGCAATGTCCCTGTTTTGACTCAATTACCTAATCAACTTATGCAAGCGATTAGTCAAAGTGGTGTGTTC
TTAGAATCCAAATTGTTAAAAGGAAAGATACCCCGAGAAATACAATCGGATTTTAAAGGGTTGTGTTTTAAATTATTACA
CTGTTTAGGCACAGACAGTAAACTCCCAATCAATCTGCCGAACGAATTGGAGTCAGGTTTTCTTCAGCAAGCGCCCCTTC
CTTTACCAGGAGCAATCCCTCAGCCACTGACTAAAGACACAATATTGAATCTTATTGGACTATCAACAGAGGCGGTACAC
CATATTTTACGTGAGCAAGTAACACAGGCATTAGCGCGAATCACAACAAATCAAATTAATTATTTATCGCAGGAGCATCA
AGAAACCTATCTAATCATGCTTGATTTTCCTTTAAAAACCCCCGATGGCATTGATGTAATCCCTATTATGATCAAACAAC
ATAAGGCAGAACCTATGCAACTGTCTAAATGGTCAATATCGTTCGCTTTGAATTTATCCCATTTAGGAAGCATACAAGCT
ACGGTTTCGATTTACGCTAAAAACATCGATATCAAGGTTAATACTCAGCAATCGTCAACATTGCAACTCATCAATGATTA
CCATAAGGATTTGGAAGAAACGCTCTATGAATCGGGGCTTCACTTAAGAGAATGGAAGCTGCAAGTTGGGTTGGAAGAAA
ATCATATCGATGCCACAAACCTTCGTTTATTGGATATAAAAATATGA

Upstream 100 bases:

>100_bases
AATTAAGACGATGAGTATATACTTATTAGACAACTTACGAAACAGTCCAGCAGGGGACGACGATAAGAAAAAGCAGTCTA
ACTGATGATAAGGATGGTGT

Downstream 100 bases:

>100_bases
AAAGAAAGAAACCCGTCGCTGTTGCATTACGCTATGATGGCAATTCTCCTCCCAAAGTAACCGCTAAAGGAGAAGGTTTA
TTTGCTCAGCAAATTATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSVEMSKTSSVRFPPGQEIKLAKPATELYVGQILKTVVVTTLSNDQVLININGQNLNAKASHHFTPGELFEVKVLANHPE
TILEVQQKTPLPSLLQNALLQYLPKQAPATNLLQTLTQLMAENKLSAPINQVMKTILGNVPVLTQLPNQLMQAISQSGVF
LESKLLKGKIPREIQSDFKGLCFKLLHCLGTDSKLPINLPNELESGFLQQAPLPLPGAIPQPLTKDTILNLIGLSTEAVH
HILREQVTQALARITTNQINYLSQEHQETYLIMLDFPLKTPDGIDVIPIMIKQHKAEPMQLSKWSISFALNLSHLGSIQA
TVSIYAKNIDIKVNTQQSSTLQLINDYHKDLEETLYESGLHLREWKLQVGLEENHIDATNLRLLDIKI

Sequences:

>Translated_388_residues
MSVEMSKTSSVRFPPGQEIKLAKPATELYVGQILKTVVVTTLSNDQVLININGQNLNAKASHHFTPGELFEVKVLANHPE
TILEVQQKTPLPSLLQNALLQYLPKQAPATNLLQTLTQLMAENKLSAPINQVMKTILGNVPVLTQLPNQLMQAISQSGVF
LESKLLKGKIPREIQSDFKGLCFKLLHCLGTDSKLPINLPNELESGFLQQAPLPLPGAIPQPLTKDTILNLIGLSTEAVH
HILREQVTQALARITTNQINYLSQEHQETYLIMLDFPLKTPDGIDVIPIMIKQHKAEPMQLSKWSISFALNLSHLGSIQA
TVSIYAKNIDIKVNTQQSSTLQLINDYHKDLEETLYESGLHLREWKLQVGLEENHIDATNLRLLDIKI
>Mature_387_residues
SVEMSKTSSVRFPPGQEIKLAKPATELYVGQILKTVVVTTLSNDQVLININGQNLNAKASHHFTPGELFEVKVLANHPET
ILEVQQKTPLPSLLQNALLQYLPKQAPATNLLQTLTQLMAENKLSAPINQVMKTILGNVPVLTQLPNQLMQAISQSGVFL
ESKLLKGKIPREIQSDFKGLCFKLLHCLGTDSKLPINLPNELESGFLQQAPLPLPGAIPQPLTKDTILNLIGLSTEAVHH
ILREQVTQALARITTNQINYLSQEHQETYLIMLDFPLKTPDGIDVIPIMIKQHKAEPMQLSKWSISFALNLSHLGSIQAT
VSIYAKNIDIKVNTQQSSTLQLINDYHKDLEETLYESGLHLREWKLQVGLEENHIDATNLRLLDIKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43254; Mature: 43123

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEMSKTSSVRFPPGQEIKLAKPATELYVGQILKTVVVTTLSNDQVLININGQNLNAKA
CCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCC
SHHFTPGELFEVKVLANHPETILEVQQKTPLPSLLQNALLQYLPKQAPATNLLQTLTQLM
CCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AENKLSAPINQVMKTILGNVPVLTQLPNQLMQAISQSGVFLESKLLKGKIPREIQSDFKG
HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHHHHHCCCCCHHHHHHHHH
LCFKLLHCLGTDSKLPINLPNELESGFLQQAPLPLPGAIPQPLTKDTILNLIGLSTEAVH
HHHHHHHHHCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHH
HILREQVTQALARITTNQINYLSQEHQETYLIMLDFPLKTPDGIDVIPIMIKQHKAEPMQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCE
LSKWSISFALNLSHLGSIQATVSIYAKNIDIKVNTQQSSTLQLINDYHKDLEETLYESGL
EEEEEEEEEEEHHHHCCHHEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
HLREWKLQVGLEENHIDATNLRLLDIKI
CEEEEEEEECCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
SVEMSKTSSVRFPPGQEIKLAKPATELYVGQILKTVVVTTLSNDQVLININGQNLNAKA
CCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCC
SHHFTPGELFEVKVLANHPETILEVQQKTPLPSLLQNALLQYLPKQAPATNLLQTLTQLM
CCCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
AENKLSAPINQVMKTILGNVPVLTQLPNQLMQAISQSGVFLESKLLKGKIPREIQSDFKG
HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHHHHHCCCCCHHHHHHHHH
LCFKLLHCLGTDSKLPINLPNELESGFLQQAPLPLPGAIPQPLTKDTILNLIGLSTEAVH
HHHHHHHHHCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHH
HILREQVTQALARITTNQINYLSQEHQETYLIMLDFPLKTPDGIDVIPIMIKQHKAEPMQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCE
LSKWSISFALNLSHLGSIQATVSIYAKNIDIKVNTQQSSTLQLINDYHKDLEETLYESGL
EEEEEEEEEEEHHHHCCHHEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
HLREWKLQVGLEENHIDATNLRLLDIKI
CEEEEEEEECCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA