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The map label for this gene is sdcA

Identifier: 54295347

GI number: 54295347

Start: 2767861

End: 2770578

Strand: Direct

Name: sdcA

Synonym: lpl2432

Alternate gene names: NA

Gene position: 2767861-2770578 (Clockwise)

Preceding gene: 54295343

Following gene: 54295348

Centisome position: 82.73

GC content: 36.28

Gene sequence:

>2718_bases
ATGGTTGACAAAATAAAATTCAAAGAGCCGGAGCGATGCGAATATTTACATATCGATAAGGATAATAAAGTCCATATTCT
TTTACCTATTGTAGGTGGGGATGAAATAGGACTGGATAATACCTGTGAAACAACAGGTGAGTTATTAGCCTTTTTCTATG
GAAAAACGCATGGTGGGACAAAGTATTCTGCTGAACATCACCTAAATGAATATAAAAAGAATCTGGAAGATGATATAAAG
GCAATCGGTGTTCAAAGAAAGATTTCACCAAATGCCTATGAAGATCTATTAAAAGAGAAAAAAGAGCGCCTGGAACAAAT
CGAAAAATATATTGATTTAATCAAAGTACTCAAAGAGAAATTTGACGAGCAAAGAGAAATAGACAAACTACGCACAGAAG
GAATTCCGCAATTACCTTCTGGAGTAAAGGAAGTCATTCAATCTTCTGAAAATGCCTTTGCTTTAAGGCTTTCCCCGGAT
AGACCAGACTCATTTACCCGCTTTGATAATCCTCTGTTTAGTCTCAAAAGAAACAGATCTCAATATGAAGCTGGGGGATA
CCAACGGGCAACTGATGGATTAGGGGCTCGTTTGCGTTCTGAGCTTCTACCACCAGATAAAGACACTCCTATTGTTTTTA
ATAAAAAATCACTGAAGGACAAAATCGTAGATTCTGTTTTAGCGCAACTTGACAAAGATTTTAATACAAAAGATGGCGAT
CGTAATCAAAAATTTGAGGATATAAAAAAACTCGTTCTAGAAGAGTACAAGAAAATTGATTCCGAACTTCAAGTGGATGA
GGATACCTATCACCAACCACTTAACTTGGATTATTTGGAAAACATAGCATGTACGTTAGATGACAACTCCACCGCGAAAG
ATTGGGTTTATGGAATTATTGGTGCTACAACAGAAGCTGATTATTGGCCAAAAAAGGAAAGTGAAAGTGGTACTGAAAAA
GTTAGTGTATTCTATGAGAAGCAAAAGGAAATAAAATTTGAATCTGATACAAATACAATGTCAATTAAAGTCCAATATCT
ATTGGCTGAGATTAATTTTTATTGTAAAACCAACAAGTTATCAGATGCTAACTTCGGTGAATTTTTTGATAAAGAGCCCC
ATGCTACTGAAGTTGCTAAAAGAGTGAAAGAAGGACTTGTTCAAGGAGCAGAGATTGAGCCTATTATTTACAATTACATT
AACAGCCACTATGCCGAACTGGGATTAACATCTCAGTTAAGCAGCAAGCAACAAGAGGAAATTACTGAAAAATTTACTCA
ACGTTATCACATTATTGAGAACTCTCCTCACTTTGATGAATTTTTTGTCGCTGATCCTGATAAAAAAGGGAATATATTCT
CCCATCAAGGCAGAATGAGTTGCCATTTCCTGGATTTCTTCGCTCGACAAACCAAAGGCAAACATCCCCTTGGTGATCTT
GCAGGTCATCAGGAAGCACTCCAGGCAGGAACCTCCAATCGGTTACATCACAAGAATGAGGTAGTCGCTCAAGGATACGA
AAAATTGGATCAATTCAAGAAAGAAGTCGTCAAACTGCTGGCAGAGAGTAAACCAAAAGAATTATTGGATTATTTGGTTG
CTACCTCCCCCACAGGCGCTCCTAATTATTCCATGCTCTCAAAGGAAACTCAAAATTATATTGCTTACAACCGTAACTGG
CCAGCCATTCAAACAGAGCTCGAAAAAACTACTGACATACCAGAGAACCAAAAACAAGATCTTGTAAGATTGCTTTCTCG
TAATAATCTGCAACACGAGAACCTCAGTGCAATTACCTGGTCAAAATATTCTTCCAAGCCATTATTGGATGTGGAGTTAA
ATAAAATCGCCGAAGGTTTAGATCTAACTGCTAAAATTTACAATGAAAAAAGAAAAAGTGAATGGTTTAAAGGTTCAAGA
AATGAGGCTCGTAAGACCCAATGTGAAGAATTGCAAAGAGTATCTCAAGAAATCAATGCTCTTCTGCAAAGTGAATCGTT
AACAAAAAGCCAAGTTCTTGAAAAAGTTTTAAACTCCATAGAAGCATTGGATAAAATTGATAGAGACATTTCTGCTGAAT
ATAATTTATTTAAGAGTACTCTGCAAAAAGAAGTACAATCATTTCGAGAGCAATTGAAAGATATCTGTCAATTAGATAAC
TATGCCTTTAAATCAACAAAACTTGATGAAATTATCTCTCTGGAAATGGAAGAACAATTTCAAATGATTAAAGATCCTGC
TGTCCAACAAATTGTCCGAGACTTGCCTTCTCATTGTCATAATAATGAAGTGATTGAATTCTTTATGACATTGAATCCTG
AAGAAGCAGCTAAAGTAGCCAGTTATTTAAGCCTGGAATATCGTGAGATTAATAAATCCACAGATAAGGCTAAGCTCCTG
AACGAGGATATCCCCAATTTGTTTAAAGAAGTCAACATGCAGTTATTATCCAAATTAAAAGAAGATAGTGTTCTGGGAGA
AGGGGTCTATGAAAAACTTGCTCAACTAGCTGATAAAATTCCTCCTGAGCATTTTACACGGAATAATATCAGAAAATGGT
CTGCCAATCCTGAAAAGCTTGAGGAGTCCAATCTCGGCGAATTATTAAAATCATCTGATAGCTCACTTTCTGAAATGGCA
AGAAAATATAGAGAAACCATAAATGAAATGACAGGAAGAAATGAGCCACCCAGAGAAACCGTTAGACACACGATATAG

Upstream 100 bases:

>100_bases
ACAAATCTTATCATCTTTTTAACAATCAGACTTATTTTTAAATACTTATAATGATTTTATAATATACTTATAGTTAGAGC
ACTAGCATAAGGTGATGAAC

Downstream 100 bases:

>100_bases
CTTGACAGTATGGAGTCAAGCAATTGTGAATAAAAAATATGATTAGATTGCGGAGTATGTGCAATCAAACAAAAAGTCTA
ATTACAAATCTTTTTGTTGT

Product: SdcA protein, paralog of SidC (substrate of the Dot/Icm system)

Products: NA

Alternate protein names: SidC Homolog; SidC Interaptin; SidC Protein

Number of amino acids: Translated: 905; Mature: 905

Protein sequence:

>905_residues
MVDKIKFKEPERCEYLHIDKDNKVHILLPIVGGDEIGLDNTCETTGELLAFFYGKTHGGTKYSAEHHLNEYKKNLEDDIK
AIGVQRKISPNAYEDLLKEKKERLEQIEKYIDLIKVLKEKFDEQREIDKLRTEGIPQLPSGVKEVIQSSENAFALRLSPD
RPDSFTRFDNPLFSLKRNRSQYEAGGYQRATDGLGARLRSELLPPDKDTPIVFNKKSLKDKIVDSVLAQLDKDFNTKDGD
RNQKFEDIKKLVLEEYKKIDSELQVDEDTYHQPLNLDYLENIACTLDDNSTAKDWVYGIIGATTEADYWPKKESESGTEK
VSVFYEKQKEIKFESDTNTMSIKVQYLLAEINFYCKTNKLSDANFGEFFDKEPHATEVAKRVKEGLVQGAEIEPIIYNYI
NSHYAELGLTSQLSSKQQEEITEKFTQRYHIIENSPHFDEFFVADPDKKGNIFSHQGRMSCHFLDFFARQTKGKHPLGDL
AGHQEALQAGTSNRLHHKNEVVAQGYEKLDQFKKEVVKLLAESKPKELLDYLVATSPTGAPNYSMLSKETQNYIAYNRNW
PAIQTELEKTTDIPENQKQDLVRLLSRNNLQHENLSAITWSKYSSKPLLDVELNKIAEGLDLTAKIYNEKRKSEWFKGSR
NEARKTQCEELQRVSQEINALLQSESLTKSQVLEKVLNSIEALDKIDRDISAEYNLFKSTLQKEVQSFREQLKDICQLDN
YAFKSTKLDEIISLEMEEQFQMIKDPAVQQIVRDLPSHCHNNEVIEFFMTLNPEEAAKVASYLSLEYREINKSTDKAKLL
NEDIPNLFKEVNMQLLSKLKEDSVLGEGVYEKLAQLADKIPPEHFTRNNIRKWSANPEKLEESNLGELLKSSDSSLSEMA
RKYRETINEMTGRNEPPRETVRHTI

Sequences:

>Translated_905_residues
MVDKIKFKEPERCEYLHIDKDNKVHILLPIVGGDEIGLDNTCETTGELLAFFYGKTHGGTKYSAEHHLNEYKKNLEDDIK
AIGVQRKISPNAYEDLLKEKKERLEQIEKYIDLIKVLKEKFDEQREIDKLRTEGIPQLPSGVKEVIQSSENAFALRLSPD
RPDSFTRFDNPLFSLKRNRSQYEAGGYQRATDGLGARLRSELLPPDKDTPIVFNKKSLKDKIVDSVLAQLDKDFNTKDGD
RNQKFEDIKKLVLEEYKKIDSELQVDEDTYHQPLNLDYLENIACTLDDNSTAKDWVYGIIGATTEADYWPKKESESGTEK
VSVFYEKQKEIKFESDTNTMSIKVQYLLAEINFYCKTNKLSDANFGEFFDKEPHATEVAKRVKEGLVQGAEIEPIIYNYI
NSHYAELGLTSQLSSKQQEEITEKFTQRYHIIENSPHFDEFFVADPDKKGNIFSHQGRMSCHFLDFFARQTKGKHPLGDL
AGHQEALQAGTSNRLHHKNEVVAQGYEKLDQFKKEVVKLLAESKPKELLDYLVATSPTGAPNYSMLSKETQNYIAYNRNW
PAIQTELEKTTDIPENQKQDLVRLLSRNNLQHENLSAITWSKYSSKPLLDVELNKIAEGLDLTAKIYNEKRKSEWFKGSR
NEARKTQCEELQRVSQEINALLQSESLTKSQVLEKVLNSIEALDKIDRDISAEYNLFKSTLQKEVQSFREQLKDICQLDN
YAFKSTKLDEIISLEMEEQFQMIKDPAVQQIVRDLPSHCHNNEVIEFFMTLNPEEAAKVASYLSLEYREINKSTDKAKLL
NEDIPNLFKEVNMQLLSKLKEDSVLGEGVYEKLAQLADKIPPEHFTRNNIRKWSANPEKLEESNLGELLKSSDSSLSEMA
RKYRETINEMTGRNEPPRETVRHTI
>Mature_905_residues
MVDKIKFKEPERCEYLHIDKDNKVHILLPIVGGDEIGLDNTCETTGELLAFFYGKTHGGTKYSAEHHLNEYKKNLEDDIK
AIGVQRKISPNAYEDLLKEKKERLEQIEKYIDLIKVLKEKFDEQREIDKLRTEGIPQLPSGVKEVIQSSENAFALRLSPD
RPDSFTRFDNPLFSLKRNRSQYEAGGYQRATDGLGARLRSELLPPDKDTPIVFNKKSLKDKIVDSVLAQLDKDFNTKDGD
RNQKFEDIKKLVLEEYKKIDSELQVDEDTYHQPLNLDYLENIACTLDDNSTAKDWVYGIIGATTEADYWPKKESESGTEK
VSVFYEKQKEIKFESDTNTMSIKVQYLLAEINFYCKTNKLSDANFGEFFDKEPHATEVAKRVKEGLVQGAEIEPIIYNYI
NSHYAELGLTSQLSSKQQEEITEKFTQRYHIIENSPHFDEFFVADPDKKGNIFSHQGRMSCHFLDFFARQTKGKHPLGDL
AGHQEALQAGTSNRLHHKNEVVAQGYEKLDQFKKEVVKLLAESKPKELLDYLVATSPTGAPNYSMLSKETQNYIAYNRNW
PAIQTELEKTTDIPENQKQDLVRLLSRNNLQHENLSAITWSKYSSKPLLDVELNKIAEGLDLTAKIYNEKRKSEWFKGSR
NEARKTQCEELQRVSQEINALLQSESLTKSQVLEKVLNSIEALDKIDRDISAEYNLFKSTLQKEVQSFREQLKDICQLDN
YAFKSTKLDEIISLEMEEQFQMIKDPAVQQIVRDLPSHCHNNEVIEFFMTLNPEEAAKVASYLSLEYREINKSTDKAKLL
NEDIPNLFKEVNMQLLSKLKEDSVLGEGVYEKLAQLADKIPPEHFTRNNIRKWSANPEKLEESNLGELLKSSDSSLSEMA
RKYRETINEMTGRNEPPRETVRHTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 104407; Mature: 104407

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDKIKFKEPERCEYLHIDKDNKVHILLPIVGGDEIGLDNTCETTGELLAFFYGKTHGGT
CCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
KYSAEHHLNEYKKNLEDDIKAIGVQRKISPNAYEDLLKEKKERLEQIEKYIDLIKVLKEK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDEQREIDKLRTEGIPQLPSGVKEVIQSSENAFALRLSPDRPDSFTRFDNPLFSLKRNRS
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCHHHHHHHCCH
QYEAGGYQRATDGLGARLRSELLPPDKDTPIVFNKKSLKDKIVDSVLAQLDKDFNTKDGD
HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCC
RNQKFEDIKKLVLEEYKKIDSELQVDEDTYHQPLNLDYLENIACTLDDNSTAKDWVYGII
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCEEEEECCCCCHHHHHHHHH
GATTEADYWPKKESESGTEKVSVFYEKQKEIKFESDTNTMSIKVQYLLAEINFYCKTNKL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCEEEEEHHHHHHHHHHHEECCCC
SDANFGEFFDKEPHATEVAKRVKEGLVQGAEIEPIIYNYINSHYAELGLTSQLSSKQQEE
CCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ITEKFTQRYHIIENSPHFDEFFVADPDKKGNIFSHQGRMSCHFLDFFARQTKGKHPLGDL
HHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCHHH
AGHQEALQAGTSNRLHHKNEVVAQGYEKLDQFKKEVVKLLAESKPKELLDYLVATSPTGA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
PNYSMLSKETQNYIAYNRNWPAIQTELEKTTDIPENQKQDLVRLLSRNNLQHENLSAITW
CCHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
SKYSSKPLLDVELNKIAEGLDLTAKIYNEKRKSEWFKGSRNEARKTQCEELQRVSQEINA
CCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LLQSESLTKSQVLEKVLNSIEALDKIDRDISAEYNLFKSTLQKEVQSFREQLKDICQLDN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YAFKSTKLDEIISLEMEEQFQMIKDPAVQQIVRDLPSHCHNNEVIEFFMTLNPEEAAKVA
CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHEECCCHHHHHHHH
SYLSLEYREINKSTDKAKLLNEDIPNLFKEVNMQLLSKLKEDSVLGEGVYEKLAQLADKI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PPEHFTRNNIRKWSANPEKLEESNLGELLKSSDSSLSEMARKYRETINEMTGRNEPPRET
CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
VRHTI
HCCCC
>Mature Secondary Structure
MVDKIKFKEPERCEYLHIDKDNKVHILLPIVGGDEIGLDNTCETTGELLAFFYGKTHGGT
CCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC
KYSAEHHLNEYKKNLEDDIKAIGVQRKISPNAYEDLLKEKKERLEQIEKYIDLIKVLKEK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FDEQREIDKLRTEGIPQLPSGVKEVIQSSENAFALRLSPDRPDSFTRFDNPLFSLKRNRS
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCHHHHHHHCCH
QYEAGGYQRATDGLGARLRSELLPPDKDTPIVFNKKSLKDKIVDSVLAQLDKDFNTKDGD
HHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCCCCC
RNQKFEDIKKLVLEEYKKIDSELQVDEDTYHQPLNLDYLENIACTLDDNSTAKDWVYGII
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCEEEEECCCCCHHHHHHHHH
GATTEADYWPKKESESGTEKVSVFYEKQKEIKFESDTNTMSIKVQYLLAEINFYCKTNKL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCCEEEEEHHHHHHHHHHHEECCCC
SDANFGEFFDKEPHATEVAKRVKEGLVQGAEIEPIIYNYINSHYAELGLTSQLSSKQQEE
CCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ITEKFTQRYHIIENSPHFDEFFVADPDKKGNIFSHQGRMSCHFLDFFARQTKGKHPLGDL
HHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCHHH
AGHQEALQAGTSNRLHHKNEVVAQGYEKLDQFKKEVVKLLAESKPKELLDYLVATSPTGA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
PNYSMLSKETQNYIAYNRNWPAIQTELEKTTDIPENQKQDLVRLLSRNNLQHENLSAITW
CCHHHHHHHHHHHEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
SKYSSKPLLDVELNKIAEGLDLTAKIYNEKRKSEWFKGSRNEARKTQCEELQRVSQEINA
CCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LLQSESLTKSQVLEKVLNSIEALDKIDRDISAEYNLFKSTLQKEVQSFREQLKDICQLDN
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YAFKSTKLDEIISLEMEEQFQMIKDPAVQQIVRDLPSHCHNNEVIEFFMTLNPEEAAKVA
CCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHEECCCHHHHHHHH
SYLSLEYREINKSTDKAKLLNEDIPNLFKEVNMQLLSKLKEDSVLGEGVYEKLAQLADKI
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PPEHFTRNNIRKWSANPEKLEESNLGELLKSSDSSLSEMARKYRETINEMTGRNEPPRET
CCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
VRHTI
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA